Package: survtype 1.23.0

Dongmin Jung

survtype: Subtype Identification with Survival Data

Subtypes are defined as groups of samples that have distinct molecular and clinical features. Genomic data can be analyzed for discovering patient subtypes, associated with clinical data, especially for survival information. This package is aimed to identify subtypes that are both clinically relevant and biologically meaningful.

Authors:Dongmin Jung

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survtype.pdf |survtype.html
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NEWS

# Install 'survtype' in R:
install.packages('survtype', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:survtype-1.23.0(bioc 3.21)survtype-1.22.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwarestatisticalmethodgeneexpressionsurvivalclusteringsequencingcoverage

4.00 score 3 scripts 158 downloads 9 exports 126 dependencies

Last updated 3 months agofrom:150b74acd7. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKDec 30 2024
R-4.5-winOKDec 31 2024
R-4.5-linuxOKDec 30 2024
R-4.4-winOKDec 31 2024
R-4.4-macOKDec 30 2024
R-4.3-winOKNov 30 2024
R-4.3-macOKDec 30 2024

Exports:Exprs.survtypegene.clustMAF.survgroupmaf2matrixplotplot.survtypequantile_normalizationSingle.survgroupSurv.survtype

Dependencies:abindaskpassbackportsBiobaseBiocGenericsBMAbootbroomcarcarDatacliclustvarselcodetoolscolorspacecommonmarkcorrplotcowplotcpp11crayoncurldata.tableDelayedArrayDEoptimRDerivdoBydplyrevaluateexactRankTestsfansifarverforeachFormulagenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2ggpubrggrepelggsciggsignifggtextgluegridExtragridtextgtablehighrhttrinlineIRangesisobanditeratorsjpegjsonlitekm.ciKMsurvknitrlabelinglatticeleapslifecyclelme4magrittrmarkdownMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmaxstatmclustmgcvmicrobenchmarkmimeminqamodelrmunsellmvtnormnlmenloptrnnetnumDerivopensslpbkrtestpcaPPpheatmappillarpkgconfigpngpolynompurrrquantregR6RColorBrewerRcppRcppEigenrlangrobustbaserrcovrstatixS4ArraysS4VectorsscalesSparseArraySparseMstringistringrSummarizedExperimentsurvivalsurvminersurvMiscsystibbletidyrtidyselectUCSC.utilsutf8vctrsviridisLitewithrxfunxml2xtableXVectoryamlzoo

Subtype Identification with Survival Data

Rendered fromsurvtype.Rmdusingknitr::rmarkdownon Dec 30 2024.

Last update: 2019-03-19
Started: 2019-02-05