Package: survClust 1.1.0
survClust: Identification Of Clinically Relevant Genomic Subtypes Using Outcome Weighted Learning
survClust is an outcome weighted integrative clustering algorithm used to classify multi-omic samples on their available time to event information. The resulting clusters are cross-validated to avoid over overfitting and output classification of samples that are molecularly distinct and clinically meaningful. It takes in binary (mutation) as well as continuous data (other omic types).
Authors:
survClust_1.1.0.tar.gz
survClust_1.1.0.zip(r-4.5)survClust_1.1.0.zip(r-4.4)survClust_1.1.0.zip(r-4.3)
survClust_1.1.0.tgz(r-4.5-x86_64)survClust_1.1.0.tgz(r-4.5-arm64)survClust_1.1.0.tgz(r-4.4-x86_64)survClust_1.1.0.tgz(r-4.4-arm64)survClust_1.1.0.tgz(r-4.3-x86_64)survClust_1.1.0.tgz(r-4.3-arm64)
survClust_1.1.0.tar.gz(r-4.5-noble)survClust_1.1.0.tar.gz(r-4.4-noble)
survClust_1.1.0.tgz(r-4.4-emscripten)survClust_1.1.0.tgz(r-4.3-emscripten)
survClust.pdf |survClust.html✨
survClust/json (API)
NEWS
# Install 'survClust' in R: |
install.packages('survClust', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/arorarshi/survclust/issues
- simdat - Simulated dataset with 3-class solution
- simsurvdat - Simulated survival dataset with accompanying 'simdat'
- uvm_dat - TCGA UVM Mutation and Copy Number datasets
- uvm_survClust_cv.fit - SurvClust cv.survclust output of integrated TCGA UVM Mutation and Copy Number datasets.
- uvm_survdat - TCGA UVM Clinical file
On BioConductor:survClust-1.1.0(bioc 3.21)survClust-1.0.0(bioc 3.20)
softwareclusteringsurvivalclassificationcpp
Last updated 4 months agofrom:ddcd08b83b. Checks:1 OK, 10 WARNING. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Feb 06 2025 |
R-4.5-win-x86_64 | WARNING | Feb 06 2025 |
R-4.5-mac-x86_64 | WARNING | Jan 29 2025 |
R-4.5-mac-aarch64 | WARNING | Jan 29 2025 |
R-4.5-linux-x86_64 | WARNING | Feb 06 2025 |
R-4.4-win-x86_64 | WARNING | Feb 06 2025 |
R-4.4-mac-x86_64 | WARNING | Feb 06 2025 |
R-4.4-mac-aarch64 | WARNING | Feb 06 2025 |
R-4.3-win-x86_64 | WARNING | Feb 06 2025 |
R-4.3-mac-x86_64 | WARNING | Feb 06 2025 |
R-4.3-mac-aarch64 | WARNING | Feb 06 2025 |
Exports:combineDistcv_survclustcv_votingdist_wtbinarygetDistgetStatsplotStatssurvClust
Dependencies:abindaskpassBiobaseBiocBaseUtilsBiocGenericsclicpp11crayoncurlDelayedArraydplyrfansigenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesjsonlitelatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeMultiAssayExperimentopensslpdistpillarpkgconfigpurrrR6RcpprlangS4ArraysS4VectorsSparseArraystringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVector