Package: spatialSimGP 1.1.0

Kinnary Shah

spatialSimGP: Simulate Spatial Transcriptomics Data with the Mean-variance Relationship

This packages simulates spatial transcriptomics data with the mean- variance relationship using a Gaussian Process model per gene.

Authors:Kinnary Shah [aut, cre], Boyi Guo [aut], Stephanie C. Hicks [aut]

spatialSimGP_1.1.0.tar.gz
spatialSimGP_1.1.0.zip(r-4.5)spatialSimGP_1.1.0.zip(r-4.4)
spatialSimGP_1.1.0.tgz(r-4.4-any)
spatialSimGP_1.1.0.tar.gz(r-4.5-noble)spatialSimGP_1.1.0.tar.gz(r-4.4-noble)
spatialSimGP_1.1.0.tgz(r-4.4-emscripten)
spatialSimGP.pdf |spatialSimGP.html✨
spatialSimGP/json (API)
NEWS

# Install 'spatialSimGP' in R:
install.packages('spatialSimGP', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kinnaryshah/spatialsimgp/issues

On BioConductor:spatialSimGP-1.1.0(bioc 3.21)spatialSimGP-1.0.0(bioc 3.20)

spatialtranscriptomicsgeneexpression

4.18 score 2 scripts 74 downloads 1 exports 65 dependencies

Last updated 4 months agofrom:ea76acac60. Checks:5 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 29 2025
R-4.5-winOKJan 29 2025
R-4.5-linuxOKJan 29 2025
R-4.4-winOKJan 29 2025
R-4.4-macOKJan 29 2025

Exports:spatial_simulate

Dependencies:abindaskpassBiobaseBiocFileCacheBiocGenericsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrDelayedArraydplyrfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesjsonlitelatticelifecyclemagickmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigplogrpurrrR6RcpprjsonrlangRSQLiteS4ArraysS4VectorsSingleCellExperimentSparseArraySpatialExperimentstringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVector

spatialSimGP Tutorial

Kinnary H. Shah, Boyi Guo, Stephanie C. Hicks

Rendered fromspatialSimGP.Rmdusingknitr::rmarkdownon Jan 29 2025.

Last update: 2024-09-12
Started: 2024-09-12