Package: spatialSimGP 1.1.0

Kinnary Shah

spatialSimGP: Simulate Spatial Transcriptomics Data with the Mean-variance Relationship

This packages simulates spatial transcriptomics data with the mean- variance relationship using a Gaussian Process model per gene.

Authors:Kinnary Shah [aut, cre], Boyi Guo [aut], Stephanie C. Hicks [aut]

spatialSimGP_1.1.0.tar.gz
spatialSimGP_1.1.0.zip(r-4.5)spatialSimGP_1.1.0.zip(r-4.4)
spatialSimGP_1.1.0.tgz(r-4.4-any)
spatialSimGP_1.1.0.tar.gz(r-4.5-noble)spatialSimGP_1.1.0.tar.gz(r-4.4-noble)
spatialSimGP_1.1.0.tgz(r-4.4-emscripten)
spatialSimGP.pdf |spatialSimGP.html✨
spatialSimGP/json (API)
NEWS

# Install 'spatialSimGP' in R:
install.packages('spatialSimGP', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/kinnaryshah/spatialsimgp/issues

On BioConductor:spatialSimGP-1.1.0(bioc 3.21)spatialSimGP-1.0.0(bioc 3.20)

spatialtranscriptomicsgeneexpression

4.18 score 2 scripts 1 exports 66 dependencies

Last updated 22 days agofrom:ea76acac60. Checks:OK: 3 WARNING: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winWARNINGOct 31 2024
R-4.5-linuxOKOct 31 2024
R-4.4-winWARNINGOct 31 2024
R-4.4-macOKOct 31 2024

Exports:spatial_simulate

Dependencies:abindaskpassBiobaseBiocFileCacheBiocGenericsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrDelayedArraydplyrfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesjsonlitelatticelifecyclemagickmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigplogrpurrrR6RcpprjsonrlangRSQLiteS4ArraysS4VectorsSingleCellExperimentSparseArraySpatialExperimentstringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVectorzlibbioc

spatialSimGP Tutorial

Kinnary H. Shah, Boyi Guo, Stephanie C. Hicks

Rendered fromspatialSimGP.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2024-09-12
Started: 2024-09-12