Package: spatialSimGP 1.7.0

Kinnary Shah

spatialSimGP: Simulate Spatial Transcriptomics Data with the Mean-variance Relationship

This packages simulates spatial transcriptomics data with the mean- variance relationship using a Gaussian Process model per gene.

Authors:Kinnary Shah [aut, cre], Boyi Guo [aut], Stephanie C. Hicks [aut]

spatialSimGP_1.7.0.tar.gz
spatialSimGP_1.7.0.zip(r-4.7)spatialSimGP_1.7.0.zip(r-4.6)spatialSimGP_1.7.0.zip(r-4.5)
spatialSimGP_1.7.0.tgz(r-4.6-any)spatialSimGP_1.7.0.tgz(r-4.5-any)
spatialSimGP_1.7.0.tar.gz(r-4.7-any)spatialSimGP_1.7.0.tar.gz(r-4.6-any)
spatialSimGP_1.7.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
spatialSimGP/json (API)
NEWS

# Install 'spatialSimGP' in R:
install.packages('spatialSimGP', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kinnaryshah/spatialsimgp/issues

On BioConductor:spatialSimGP-1.7.0(bioc 3.24)spatialSimGP-1.6.0(bioc 3.23)

spatialtranscriptomicsgeneexpression

4.00 score 4 scripts 222 downloads 1 exports 59 dependencies

Last updated from:4c53af5559. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE196
linux-devel-x86_64OK418
source / vignettesOK285
linux-release-x86_64OK346
macos-release-arm64OK372
macos-oldrel-arm64OK285
windows-develOK338
windows-releaseOK307
windows-oldrelOK347
wasm-releaseOK159

Exports:spatial_simulate

Dependencies:abindaskpassBiobaseBiocFileCacheBiocGenericsbitbit64blobcachemclicpp11curlDBIdbplyrDelayedArraydplyrfastmapfilelockgenericsGenomicRangesgluehttr2IRangeslatticelifecyclemagickmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoiseopensslpillarpkgconfigpurrrR6rappdirsRcpprjsonrlangRSQLiteS4ArraysS4VectorsSeqinfoSingleCellExperimentSparseArraySpatialExperimentstringistringrSummarizedExperimentsystibbletidyrtidyselectutf8vctrswithrXVector

spatialSimGP Tutorial

Kinnary H. Shah, Boyi Guo, Stephanie C. Hicks

Rendered fromspatialSimGP.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2024-09-12
Started: 2024-09-12