Package: spatialSimGP 1.7.0

Kinnary Shah

spatialSimGP: Simulate Spatial Transcriptomics Data with the Mean-variance Relationship

This packages simulates spatial transcriptomics data with the mean- variance relationship using a Gaussian Process model per gene.

Authors:Kinnary Shah [aut, cre], Boyi Guo [aut], Stephanie C. Hicks [aut]

spatialSimGP_1.7.0.tar.gz
spatialSimGP_1.7.0.zip(r-4.7-any)spatialSimGP_1.7.0.zip(r-4.6-any)spatialSimGP_1.7.0.zip(r-4.5-any)
spatialSimGP_1.7.0.tgz(r-4.6-any)spatialSimGP_1.7.0.tgz(r-4.5-any)
spatialSimGP_1.7.0.tar.gz(r-4.7-any)spatialSimGP_1.7.0.tar.gz(r-4.6-any)
spatialSimGP_1.7.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
spatialSimGP/json (API)

# Install 'spatialSimGP' in R:

install.packages('spatialSimGP', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kinnaryshah/spatialsimgp/issues

On BioConductor:spatialSimGP-1.7.0(bioc 3.24)spatialSimGP-1.6.0(bioc 3.23)

spatial transcriptomics geneexpression

4.00 score 2 scripts 254 downloads 1 exports 58 dependencies

Last updated from:4c53af5559. Checks:1 WARNING, 1 ERROR, 8 OK. Indexed: yes.

Target	Result	Time	Files	Syslog
bioc-checks	WARNING	174
linux-devel	ERROR	360
source / vignettes	OK	241
linux-release	OK	337
macos-release	OK	223
macos-oldrel	OK	255
windows-devel	OK	326
windows-release	OK	309
windows-oldrel	OK	313
wasm-release	OK	118

Exports:spatial_simulate

Dependencies:abind askpass Biobase BiocFileCache BiocGenerics bit bit64 blob cachem cli cpp11 curl DBI dbplyr DelayedArray dplyr fastmap filelock generics GenomicRanges glue httr2 IRanges lattice lifecycle magick magrittr MASS Matrix MatrixGenerics matrixStats memoise openssl pillar pkgconfig purrr R6 Rcpp rjson rlang RSQLite S4Arrays S4Vectors Seqinfo SingleCellExperiment SparseArray SpatialExperiment stringi stringr SummarizedExperiment sys tibble tidyr tidyselect utf8 vctrs withr XVector

spatialSimGP Tutorial

Introduction | Installation | Simulation Framework | Tutorial

Rendered fromspatialSimGP.Rmdusingknitr::rmarkdown

Last update: 2024-09-12
Started: 2024-09-12

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Simulate SpatialExperiment object	spatial_simulate

Usage by other packages (reverse dependencies)