Introduction | Installation | Simulation Framework | Tutorial
Package: spatialSimGP 1.7.0
Kinnary Shah
spatialSimGP: Simulate Spatial Transcriptomics Data with the Mean-variance Relationship
This packages simulates spatial transcriptomics data with the mean- variance relationship using a Gaussian Process model per gene.
Authors:
spatialSimGP_1.7.0.tar.gz
spatialSimGP_1.7.0.zip(r-4.7)spatialSimGP_1.7.0.zip(r-4.6)spatialSimGP_1.7.0.zip(r-4.5)
spatialSimGP_1.7.0.tgz(r-4.6-any)spatialSimGP_1.7.0.tgz(r-4.5-any)
spatialSimGP_1.7.0.tar.gz(r-4.7-any)spatialSimGP_1.7.0.tar.gz(r-4.6-any)
spatialSimGP_1.7.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
spatialSimGP/json (API)
| # Install 'spatialSimGP' in R: |
| install.packages('spatialSimGP', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kinnaryshah/spatialsimgp/issues
On BioConductor:spatialSimGP-1.7.0(bioc 3.24)spatialSimGP-1.6.0(bioc 3.23)
spatialtranscriptomicsgeneexpression
Last updated from:4c53af5559. Checks:1 NOTE, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 204 | ||
| linux-devel-x86_64 | OK | 358 | ||
| source / vignettes | OK | 287 | ||
| linux-release-x86_64 | OK | 321 | ||
| macos-release-arm64 | OK | 188 | ||
| macos-oldrel-arm64 | OK | 174 | ||
| windows-devel | OK | 357 | ||
| windows-release | OK | 323 | ||
| windows-oldrel | OK | 355 | ||
| wasm-release | OK | 179 |
Exports:spatial_simulate
Dependencies:abindaskpassBiobaseBiocFileCacheBiocGenericsbitbit64blobcachemclicpp11curlDBIdbplyrDelayedArraydplyrfastmapfilelockgenericsGenomicRangesgluehttr2IRangeslatticelifecyclemagickmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoiseopensslpillarpkgconfigpurrrR6rappdirsRcpprjsonrlangRSQLiteS4ArraysS4VectorsSeqinfoSingleCellExperimentSparseArraySpatialExperimentstringistringrSummarizedExperimentsystibbletidyrtidyselectutf8vctrswithrXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Simulate SpatialExperiment object | spatial_simulate |
