Package: snm 1.61.0

John D. Storey

snm: Supervised Normalization of Microarrays

SNM is a modeling strategy especially designed for normalizing high-throughput genomic data. The underlying premise of our approach is that your data is a function of what we refer to as study-specific variables. These variables are either biological variables that represent the target of the statistical analysis, or adjustment variables that represent factors arising from the experimental or biological setting the data is drawn from. The SNM approach aims to simultaneously model all study-specific variables in order to more accurately characterize the biological or clinical variables of interest.

Authors:Brig Mecham and John D. Storey <[email protected]>

snm_1.61.0.tar.gz
snm_1.61.0.zip(r-4.7)snm_1.61.0.zip(r-4.6)snm_1.61.0.zip(r-4.5)
snm_1.61.0.tgz(r-4.6-any)snm_1.61.0.tgz(r-4.5-any)
snm_1.61.0.tar.gz(r-4.7-any)snm_1.61.0.tar.gz(r-4.6-any)
snm_1.61.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
snm/json (API)
NEWS

# Install 'snm' in R:
install.packages('snm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:snm-1.61.0(bioc 3.24)snm-1.60.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarrayonechanneltwochannelmultichanneldifferentialexpressionexonarraygeneexpressiontranscriptionmultiplecomparisonpreprocessingqualitycontrol

4.47 score 73 scripts 408 downloads 2 mentions 5 exports 15 dependencies

Last updated from:166456a299. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR135
linux-devel-x86_64NOTE305
source / vignettesOK221
linux-release-x86_64NOTE274
macos-release-arm64NOTE205
macos-oldrel-arm64NOTE257
windows-develNOTE270
windows-releaseNOTE262
windows-oldrelNOTE216
wasm-releaseOK100

Exports:sim.doubleChannelsim.preProcessedsim.refDesignsim.singleChannelsnm

Dependencies:bootcorpcorlatticelme4MASSMatrixminqanlmenloptrrbibutilsRcppRcppEigenRdpackreformulasrlang

snm Tutorial

Rendered fromsnm.Rnwusingutils::Sweaveon May 22 2026.

Last update: 2013-11-01
Started: 2013-11-01