Package: snm 1.55.0

John D. Storey

snm: Supervised Normalization of Microarrays

SNM is a modeling strategy especially designed for normalizing high-throughput genomic data. The underlying premise of our approach is that your data is a function of what we refer to as study-specific variables. These variables are either biological variables that represent the target of the statistical analysis, or adjustment variables that represent factors arising from the experimental or biological setting the data is drawn from. The SNM approach aims to simultaneously model all study-specific variables in order to more accurately characterize the biological or clinical variables of interest.

Authors:Brig Mecham and John D. Storey <[email protected]>

snm_1.55.0.tar.gz
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snm.pdf |snm.html
snm/json (API)
NEWS

# Install 'snm' in R:
install.packages('snm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:snm-1.55.0(bioc 3.21)snm-1.54.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarrayonechanneltwochannelmultichanneldifferentialexpressionexonarraygeneexpressiontranscriptionmultiplecomparisonpreprocessingqualitycontrol

4.40 score 63 scripts 316 downloads 2 mentions 5 exports 14 dependencies

Last updated 3 months agofrom:1e313ea37a. Checks:1 OK, 6 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 13 2025
R-4.5-winNOTEJan 13 2025
R-4.5-linuxNOTEJan 13 2025
R-4.4-winNOTEJan 13 2025
R-4.4-macNOTEJan 13 2025
R-4.3-winNOTEJan 13 2025
R-4.3-macNOTEJan 13 2025

Exports:sim.doubleChannelsim.preProcessedsim.refDesignsim.singleChannelsnm

Dependencies:bootcorpcorlatticelme4MASSMatrixminqanlmenloptrrbibutilsRcppRcppEigenRdpackreformulas

snm Tutorial

Rendered fromsnm.Rnwusingutils::Sweaveon Jan 13 2025.

Last update: 2013-11-01
Started: 2013-11-01