Package: sketchR 1.1.0

Charlotte Soneson

sketchR: An R interface for python subsampling/sketching algorithms

Provides an R interface for various subsampling algorithms implemented in python packages. Currently, interfaces to the geosketch and scSampler python packages are implemented. In addition it also provides diagnostic plots to evaluate the subsampling.

Authors:Charlotte Soneson [aut, cre], Michael Stadler [aut], Friedrich Miescher Institute for Biomedical Research [cph]

sketchR_1.1.0.tar.gz
sketchR_1.1.0.zip(r-4.5)sketchR_1.1.0.zip(r-4.4)sketchR_1.1.0.zip(r-4.3)
sketchR_1.1.0.tgz(r-4.4-any)sketchR_1.1.0.tgz(r-4.3-any)
sketchR_1.1.0.tar.gz(r-4.5-noble)sketchR_1.1.0.tar.gz(r-4.4-noble)
sketchR_1.1.0.tgz(r-4.4-emscripten)sketchR_1.1.0.tgz(r-4.3-emscripten)
sketchR.pdf |sketchR.html✨
sketchR/json (API)
NEWS

# Install 'sketchR' in R:
install.packages('sketchR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/fmicompbio/sketchr/issues

On BioConductor:sketchR-1.1.0(bioc 3.20)sketchR-1.0.0(bioc 3.19)

bioconductor-package

6 exports 0.82 score 56 dependencies

Last updated 2 months agofrom:de35d60922

Exports:compareCompositionPlotgeosketchgetGeosketchNamesgetScSamplerNameshausdorffDistPlotscsampler

Dependencies:abindbasiliskbasilisk.utilsBiobaseBiocGenericsclicolorspacecrayonDelayedArraydir.expirydplyrfansifarverfilelockgenericsggplot2gluegtablehereIRangesisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmunsellnlmepillarpkgconfigpngR6rappdirsRColorBrewerRcppRcppTOMLreticulaterlangrprojrootS4ArraysS4VectorsscalesSparseArraytibbletidyselectutf8vctrsviridisLitewithrXVectorzlibbioc

Subsampling single-cell data sets with sketchR

Rendered fromsketchR.Rmdusingknitr::rmarkdownon Jun 22 2024.

Last update: 2024-02-23
Started: 2022-01-20