Package: sketchR 1.9.1

Charlotte Soneson

sketchR: An R interface for python subsampling/sketching algorithms

Provides an R interface for various subsampling algorithms implemented in python packages. Currently, interfaces to the geosketch and scSampler python packages are implemented. In addition it also provides diagnostic plots to evaluate the subsampling.

Authors:Charlotte Soneson [aut, cre], Michael Stadler [aut], Friedrich Miescher Institute for Biomedical Research [cph]

sketchR_1.9.1.tar.gz
sketchR_1.9.1.zip(r-4.7)sketchR_1.9.1.zip(r-4.6)sketchR_1.9.1.zip(r-4.5)
sketchR_1.9.1.tgz(r-4.6-any)sketchR_1.9.1.tgz(r-4.5-any)
sketchR_1.9.1.tar.gz(r-4.7-any)sketchR_1.9.1.tar.gz(r-4.6-any)
sketchR_1.9.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
sketchR/json (API)
NEWS

# Install 'sketchR' in R:
install.packages('sketchR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fmicompbio/sketchr/issues

On BioConductor:sketchR-1.9.0(bioc 3.24)sketchR-1.8.0(bioc 3.23)

singlecell

5.66 score 3 stars 11 scripts 240 downloads 6 exports 49 dependencies

Last updated from:f1e060bd60. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE254
linux-devel-x86_64NOTE1201
source / vignettesOK1360
linux-release-x86_64NOTE1181
macos-release-arm64NOTE1069
macos-oldrel-arm64NOTE718
windows-develNOTE723
windows-releaseNOTE1018
windows-oldrelNOTE772
wasm-releaseOK199

Exports:compareCompositionPlotgeosketchgetGeosketchNamesgetScSamplerNameshausdorffDistPlotscsampler

Dependencies:abindbasiliskBiobaseBiocGenericsclicpp11DelayedArraydir.expirydplyrfarverfilelockgenericsggplot2gluegtablehereIRangesisobandjsonlitelabelinglatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatspillarpkgconfigpngR6rappdirsRColorBrewerRcppRcppTOMLreticulaterlangrprojrootS4ArraysS4VectorsS7scalesSparseArraytibbletidyselectutf8vctrsviridisLitewithrXVector

Incorporating sketching into a typical single-cell analysis workflow

Rendered fromsketching_workflows.Rmdusingknitr::rmarkdownon May 14 2026.

Last update: 2026-05-14
Started: 2025-08-12

Subsampling single-cell data sets with sketchR

Rendered fromsketchR.Rmdusingknitr::rmarkdownon May 14 2026.

Last update: 2026-05-14
Started: 2022-01-20