Package: sketchR 1.9.1

Charlotte Soneson

sketchR: An R interface for python subsampling/sketching algorithms

Provides an R interface for various subsampling algorithms implemented in python packages. Currently, interfaces to the geosketch and scSampler python packages are implemented. In addition it also provides diagnostic plots to evaluate the subsampling.

Authors:Charlotte Soneson [aut, cre], Michael Stadler [aut], Friedrich Miescher Institute for Biomedical Research [cph]

sketchR_1.9.1.tar.gz
sketchR_1.9.1.zip(r-4.7)sketchR_1.9.1.zip(r-4.6)sketchR_1.9.1.zip(r-4.5)
sketchR_1.9.1.tgz(r-4.6-any)sketchR_1.9.1.tgz(r-4.5-any)
sketchR_1.9.1.tar.gz(r-4.7-any)sketchR_1.9.1.tar.gz(r-4.6-any)
sketchR_1.9.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
sketchR/json (API)

# Install 'sketchR' in R:
install.packages('sketchR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fmicompbio/sketchr/issues

On BioConductor:sketchR-1.9.1(bioc 3.24)sketchR-1.8.0(bioc 3.23)

singlecell

5.56 score 3 stars 9 scripts 231 downloads 6 exports 49 dependencies

Last updated from:f1e060bd60. Checks:8 NOTE, 2 OK. Indexed: yes.

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bioc-checksNOTE253
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source / vignettesOK1289
linux-release-x86_64NOTE1233
macos-release-arm64NOTE620
macos-oldrel-arm64NOTE744
windows-develNOTE671
windows-releaseNOTE699
windows-oldrelNOTE856
wasm-releaseOK213

Exports:compareCompositionPlotgeosketchgetGeosketchNamesgetScSamplerNameshausdorffDistPlotscsampler

Dependencies:abindbasiliskBiobaseBiocGenericsclicpp11DelayedArraydir.expirydplyrfarverfilelockgenericsggplot2gluegtablehereIRangesisobandjsonlitelabelinglatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatspillarpkgconfigpngR6rappdirsRColorBrewerRcppRcppTOMLreticulaterlangrprojrootS4ArraysS4VectorsS7scalesSparseArraytibbletidyselectutf8vctrsviridisLitewithrXVector

Incorporating sketching into a typical single-cell analysis workflow
Introduction | Preparation | Sketch cells | Principal component analysis (PCA) | t-SNE | UMAP | Clustering | Session info
Rendered fromsketching_workflows.Rmdusingknitr::rmarkdown

Last update: 2026-05-14
Started: 2025-08-12

Subsampling single-cell data sets with sketchR
Introduction | Installation | Preparation | Subsampling | Diagnostic plots | Session info | References
Rendered fromsketchR.Rmdusingknitr::rmarkdown

Last update: 2026-05-14
Started: 2022-01-20