Package: sketchR 1.9.1

Charlotte Soneson

sketchR: An R interface for python subsampling/sketching algorithms

Provides an R interface for various subsampling algorithms implemented in python packages. Currently, interfaces to the geosketch and scSampler python packages are implemented. In addition it also provides diagnostic plots to evaluate the subsampling.

Authors:Charlotte Soneson [aut, cre], Michael Stadler [aut], Friedrich Miescher Institute for Biomedical Research [cph]

sketchR_1.9.1.tar.gz
sketchR_1.9.1.zip(r-4.7)sketchR_1.9.1.zip(r-4.6)sketchR_1.9.1.zip(r-4.5)
sketchR_1.9.1.tgz(r-4.6-any)sketchR_1.9.1.tgz(r-4.5-any)
sketchR_1.9.1.tar.gz(r-4.7-any)sketchR_1.9.1.tar.gz(r-4.6-any)
sketchR_1.9.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
sketchR/json (API)

# Install 'sketchR' in R:
install.packages('sketchR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fmicompbio/sketchr/issues

On BioConductor:sketchR-1.9.1(bioc 3.24)sketchR-1.8.0(bioc 3.23)

singlecell

5.56 score 3 stars 10 scripts 266 downloads 6 exports 49 dependencies

Last updated from:f1e060bd60. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING245
linux-devel-x86_64NOTE1381
source / vignettesOK1384
linux-release-x86_64NOTE1222
macos-release-arm64NOTE612
macos-oldrel-arm64NOTE990
windows-develNOTE1258
windows-releaseNOTE1101
windows-oldrelNOTE1131
wasm-releaseOK232

Exports:compareCompositionPlotgeosketchgetGeosketchNamesgetScSamplerNameshausdorffDistPlotscsampler

Dependencies:abindbasiliskBiobaseBiocGenericsclicpp11DelayedArraydir.expirydplyrfarverfilelockgenericsggplot2gluegtablehereIRangesisobandjsonlitelabelinglatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatspillarpkgconfigpngR6rappdirsRColorBrewerRcppRcppTOMLreticulaterlangrprojrootS4ArraysS4VectorsS7scalesSparseArraytibbletidyselectutf8vctrsviridisLitewithrXVector

Incorporating sketching into a typical single-cell analysis workflow
Introduction | Preparation | Sketch cells | Principal component analysis (PCA) | t-SNE | UMAP | Clustering | Session info
Rendered fromsketching_workflows.Rmdusingknitr::rmarkdown

Last update: 2026-05-14
Started: 2025-08-12

Subsampling single-cell data sets with sketchR
Introduction | Installation | Preparation | Subsampling | Diagnostic plots | Session info | References
Rendered fromsketchR.Rmdusingknitr::rmarkdown

Last update: 2026-05-14
Started: 2022-01-20