Package: sketchR 1.3.0

Charlotte Soneson

sketchR: An R interface for python subsampling/sketching algorithms

Provides an R interface for various subsampling algorithms implemented in python packages. Currently, interfaces to the geosketch and scSampler python packages are implemented. In addition it also provides diagnostic plots to evaluate the subsampling.

Authors:Charlotte Soneson [aut, cre], Michael Stadler [aut], Friedrich Miescher Institute for Biomedical Research [cph]

sketchR_1.3.0.tar.gz
sketchR_1.3.0.zip(r-4.5)sketchR_1.3.0.zip(r-4.4)sketchR_1.3.0.zip(r-4.3)
sketchR_1.3.0.tgz(r-4.5-any)sketchR_1.3.0.tgz(r-4.4-any)sketchR_1.3.0.tgz(r-4.3-any)
sketchR_1.3.0.tar.gz(r-4.5-noble)sketchR_1.3.0.tar.gz(r-4.4-noble)
sketchR_1.3.0.tgz(r-4.4-emscripten)sketchR_1.3.0.tgz(r-4.3-emscripten)
sketchR.pdf |sketchR.html✨
sketchR/json (API)
NEWS

# Install 'sketchR' in R:
install.packages('sketchR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fmicompbio/sketchr/issues

On BioConductor:sketchR-1.3.0(bioc 3.21)sketchR-1.2.0(bioc 3.20)

singlecell

5.43 score 3 stars 3 scripts 180 downloads 6 exports 55 dependencies

Last updated 3 months agofrom:e11ec9e445. Checks:1 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 22 2025
R-4.5-winNOTEMar 22 2025
R-4.5-macNOTEMar 22 2025
R-4.5-linuxNOTEMar 22 2025
R-4.4-winNOTEMar 22 2025
R-4.4-macNOTEMar 22 2025
R-4.4-linuxNOTEMar 22 2025
R-4.3-winNOTEMar 22 2025
R-4.3-macNOTEMar 22 2025

Exports:compareCompositionPlotgeosketchgetGeosketchNamesgetScSamplerNameshausdorffDistPlotscsampler

Dependencies:abindbasiliskbasilisk.utilsBiobaseBiocGenericsclicolorspacecrayonDelayedArraydir.expirydplyrfansifarverfilelockgenericsggplot2gluegtablehereIRangesisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmunsellnlmepillarpkgconfigpngR6rappdirsRColorBrewerRcppRcppTOMLreticulaterlangrprojrootS4ArraysS4VectorsscalesSparseArraytibbletidyselectutf8vctrsviridisLitewithrXVector

Subsampling single-cell data sets with sketchR

Rendered fromsketchR.Rmdusingknitr::rmarkdownon Mar 22 2025.

Last update: 2024-02-23
Started: 2022-01-20