Package: similaRpeak 1.37.0

Astrid Deschênes

similaRpeak: Metrics to estimate a level of similarity between two ChIP-Seq profiles

This package calculates metrics which quantify the level of similarity between ChIP-Seq profiles. More specifically, the package implements six pseudometrics specialized in pattern similarity detection in ChIP-Seq profiles.

Authors:Astrid Deschênes [cre, aut], Elsa Bernatchez [aut], Charles Joly Beauparlant [aut], Fabien Claude Lamaze [aut], Rawane Samb [aut], Pascal Belleau [aut], Arnaud Droit [aut]

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similaRpeak.pdf |similaRpeak.html✨
similaRpeak/json (API)
NEWS

# Install 'similaRpeak' in R:
install.packages('similaRpeak', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/adeschen/similarpeak/issues

Datasets:
  • chr7Profiles - ChIP-Seq profiles of region chr7:61968807-61969730 related to enhancers H3K27ac and H3K4me1
  • demoProfiles - ChIP-Seq profiles of region chr7:61968807-61969730 related to enhancers H3K27ac and H3K4me1

On BioConductor:similaRpeak-1.37.0(bioc 3.20)similaRpeak-1.36.0(bioc 3.19)

bioconductor-package

2 exports 1.00 score 1 dependencies 1 mentions

Last updated 2 months agofrom:7322f177be

Exports:MetricFactorysimilarity

Dependencies:R6

Similarity between two ChIP-Seq profiles

Rendered fromsimilaRpeak.Rmdusingknitr::rmarkdownon Jun 19 2024.

Last update: 2017-04-01
Started: 2015-04-10