Package: similaRpeak 1.39.0
Astrid Deschênes
similaRpeak: Metrics to estimate a level of similarity between two ChIP-Seq profiles
This package calculates metrics which quantify the level of similarity between ChIP-Seq profiles. More specifically, the package implements six pseudometrics specialized in pattern similarity detection in ChIP-Seq profiles.
Authors:
similaRpeak_1.39.0.tar.gz
similaRpeak_1.39.0.zip(r-4.5)similaRpeak_1.39.0.zip(r-4.4)similaRpeak_1.39.0.zip(r-4.3)
similaRpeak_1.39.0.tgz(r-4.4-any)similaRpeak_1.39.0.tgz(r-4.3-any)
similaRpeak_1.39.0.tar.gz(r-4.5-noble)similaRpeak_1.39.0.tar.gz(r-4.4-noble)
similaRpeak_1.39.0.tgz(r-4.4-emscripten)similaRpeak_1.39.0.tgz(r-4.3-emscripten)
similaRpeak.pdf |similaRpeak.html✨
similaRpeak/json (API)
NEWS
| # Install 'similaRpeak' in R: |
| install.packages('similaRpeak', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/adeschen/similarpeak/issues
- chr7Profiles - ChIP-Seq profiles of region chr7:61968807-61969730 related to enhancers H3K27ac and H3K4me1
- demoProfiles - ChIP-Seq profiles of region chr7:61968807-61969730 related to enhancers H3K27ac and H3K4me1
On BioConductor:similaRpeak-1.39.0(bioc 3.21)similaRpeak-1.38.0(bioc 3.20)
biologicalquestionchipseqgeneticsmultiplecomparisondifferentialexpressionbioconductorbioconductor-packagechip-profileschip-seqmetrics
Last updated 23 days agofrom:e8beccd975. Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 19 2024 |
| R-4.5-win | NOTE | Nov 19 2024 |
| R-4.5-linux | NOTE | Nov 19 2024 |
| R-4.4-win | NOTE | Nov 19 2024 |
| R-4.4-mac | NOTE | Nov 19 2024 |
| R-4.3-win | OK | Nov 19 2024 |
| R-4.3-mac | OK | Nov 19 2024 |
Exports:MetricFactorysimilarity
Dependencies:R6
