Package: shinyepico 1.13.0

Octavio Morante-Palacios

shinyepico: ShinyÉPICo

ShinyÉPICo is a graphical pipeline to analyze Illumina DNA methylation arrays (450k or EPIC). It allows to calculate differentially methylated positions and differentially methylated regions in a user-friendly interface. Moreover, it includes several options to export the results and obtain files to perform downstream analysis.

Authors:Octavio Morante-Palacios [cre, aut]

shinyepico_1.13.0.tar.gz
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shinyepico_1.13.0.tgz(r-4.4-any)shinyepico_1.13.0.tgz(r-4.3-any)
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shinyepico.pdf |shinyepico.html✨
shinyepico/json (API)
NEWS

# Install 'shinyepico' in R:

install.packages('shinyepico', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/omorante/shiny_epico/issues

On BioConductor:shinyepico-1.13.0(bioc 3.20)shinyepico-1.12.0(bioc 3.19)

bioconductor-package

1 exports 0.49 score 196 dependencies

Last updated 2 months agofrom:605d58a3dc

Exports:run_shinyepico

Dependencies:abind annotate AnnotationDbi anytime askpass assertthat base64 base64enc beanplot BH Biobase BiocGenerics BiocIO BiocParallel Biostrings bit bit64 bitops blob bslib bumphunter ca cachem callr caTools cli clipr cluster codetools colorspace commonmark cpp11 crayon crosstalk curl data.table DBI DelayedArray DelayedMatrixStats dendextend digest doParallel doRNG dplyr DT egg evaluate fansi farver fastmap fontawesome foreach formatR fs futile.logger futile.options gclus genefilter generics GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges GEOquery ggplot2 glue gplots gridExtra gtable gtools HDF5Array heatmaply highr hms htmltools htmlwidgets httpuv httr illuminaio IRanges isoband iterators jquerylib jsonlite KEGGREST KernSmooth knitr labeling lambda.r later lattice lazyeval lifecycle limma locfit magrittr MASS Matrix MatrixGenerics matrixStats mclust memoise mgcv mime minfi multtest munsell nlme nor1mix openssl permute pillar pkgconfig plogr plotly plyr png preprocessCore prettyunits processx progress promises ps purrr qap quadprog R.methodsS3 R.oo R.utils R6 rappdirs RColorBrewer Rcpp RCurl readr registry reshape reshape2 restfulr rhdf5 rhdf5filters Rhdf5lib Rhtslib rjson rlang rmarkdown rngtools Rsamtools RSQLite rtracklayer S4Arrays S4Vectors sass scales scrime seriation shiny shinycssloaders shinyjs shinythemes shinyWidgets siggenes snow sourcetools SparseArray sparseMatrixStats statmod stringi stringr SummarizedExperiment survival sys tibble tidyr tidyselect tinytex TSP tzdb UCSC.utils utf8 vctrs vegan viridis viridisLite vroom webshot withr xfun XML xml2 xtable XVector yaml zip zlibbioc

shinyÉPICo: the user's guide

Octavio Morante-Palacios, Esteban Ballestar

Rendered fromshiny_epico.Rmdusingknitr::rmarkdownon Jun 29 2024.

Last update: 2020-11-20
Started: 2020-03-27

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
shinyÉPICo: a graphical and interactive pipeline to analyze Illumina DNA Methylation Arrays	shinyepico-package shinyepico
Run Shiny ÉPICo!	run_shinyepico