Package: shinyepico 1.21.0

Octavio Morante-Palacios

shinyepico: ShinyÉPICo

ShinyÉPICo is a graphical pipeline to analyze Illumina DNA methylation arrays (450k or EPIC). It allows to calculate differentially methylated positions and differentially methylated regions in a user-friendly interface. Moreover, it includes several options to export the results and obtain files to perform downstream analysis.

Authors:Octavio Morante-Palacios [cre, aut]

shinyepico_1.21.0.tar.gz
shinyepico_1.21.0.zip(r-4.7)shinyepico_1.21.0.zip(r-4.6)shinyepico_1.21.0.zip(r-4.5)
shinyepico_1.21.0.tgz(r-4.6-any)shinyepico_1.21.0.tgz(r-4.5-any)
shinyepico_1.21.0.tar.gz(r-4.7-any)shinyepico_1.21.0.tar.gz(r-4.6-any)
shinyepico_1.21.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
shinyepico/json (API)
NEWS

# Install 'shinyepico' in R:
install.packages('shinyepico', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/omorante/shiny_epico/issues

On BioConductor:shinyepico-1.21.0(bioc 3.24)shinyepico-1.20.0(bioc 3.23)

differentialmethylationdnamethylationmicroarraypreprocessingqualitycontrol

5.08 score 6 stars 1 scripts 358 downloads 1 exports 201 dependencies

Last updated from:f44c2c2304. Checks:1 WARNING, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING633
linux-devel-x86_64OK703
source / vignettesOK741
linux-release-x86_64OK779
macos-release-arm64OK448
macos-oldrel-arm64OK452
windows-develOK612
windows-releaseOK721
windows-oldrelOK698
wasm-releaseOK666

Exports:run_shinyepico

Dependencies:abindannotateAnnotationDbiaskpassassertthatbase64base64encbeanplotBHBiobaseBiocBaseUtilsBiocGenericsBiocIObiocmakeBiocParallelBiostringsbitbit64bitopsblobbslibbumphuntercacachemcallrcaToolscigarilloclicliprclustercodetoolscolorspacecommonmarkcpp11crayoncrosstalkcurldata.tableDBIDelayedArrayDelayedMatrixStatsdendextenddigestdir.expirydoParalleldoRNGdplyrDTeggevaluatefarverfastmapfilelockfontawesomeforeachformatRfsfutile.loggerfutile.optionsgclusgenefiltergenericsGenomicAlignmentsGenomicFeaturesGenomicRangesGEOqueryggplot2gluegplotsgridExtragtablegtoolsh5mreadHDF5Arrayheatmaplyhighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2illuminaioIRangesisobanditeratorsjquerylibjsonliteKEGGRESTKernSmoothknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemgcvmimeminfimulttestnlmenor1mixopensslotelpermutepillarpkgconfigplotlyplyrpngpreprocessCoreprettyunitsprocessxprogresspromisespspurrrqapquadprogR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRCurlreadrregistryrentrezreshapereshape2restfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrmarkdownrngtoolsRsamtoolsRSQLitertracklayerrvestS4ArraysS4VectorsS7sassscalesscrimeselectrSeqinfoseriationshinyshinycssloadersshinyjsshinythemesshinyWidgetssiggenessnowsourcetoolsSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttinytexTSPtzdbutf8vctrsveganviridisviridisLitevroomwebshotwithrxfunXMLxml2xtableXVectoryamlzip

shinyÉPICo: the user's guide

Octavio Morante-Palacios, Esteban Ballestar

Rendered fromshiny_epico.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2020-11-20
Started: 2020-03-27