Package: seqLogo 1.73.0

Robert Ivanek

seqLogo: Sequence logos for DNA sequence alignments

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

Authors:Oliver Bembom [aut], Robert Ivanek [aut, cre]

seqLogo_1.73.0.tar.gz
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seqLogo.pdf |seqLogo.html✨
seqLogo/json (API)
NEWS

# Install 'seqLogo' in R:
install.packages('seqLogo', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ivanek/seqlogo/issues

On BioConductor:seqLogo-1.73.0(bioc 3.21)seqLogo-1.72.0(bioc 3.20)

sequencematching

10.52 score 4 stars 29 packages 284 scripts 5.6k downloads 24 mentions 8 exports 0 dependencies

Last updated 15 days agofrom:118d6402ae. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winOKOct 31 2024
R-4.5-linuxOKOct 31 2024
R-4.4-winOKOct 31 2024
R-4.4-macOKOct 31 2024
R-4.3-winOKOct 31 2024
R-4.3-macOKOct 31 2024

Exports:consensusicmakePWMplotpwmseqLogoshowsummary

Dependencies:

Sequence logos for DNA sequence alignments

Oliver Bembom, Robert Ivánek

Rendered fromseqLogo.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2020-05-08
Started: 2020-05-08

Readme and manuals

Help Manual

Help pageTopics
Constructing a pwm objectmakePWM
An S4 class to represent a PWM matrix.alphabet consensus consensus,pwm-method ic ic,pwm-method plot,pwm,ANY-method pwm pwm,pwm-method pwm-class show,pwm-method summary,pwm-method
Plot a sequence logo for a given position weight matrixseqLogo