Package: seqLogo 1.71.0

Robert Ivanek

seqLogo: Sequence logos for DNA sequence alignments

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

Authors:Oliver Bembom [aut], Robert Ivanek [aut, cre]

seqLogo_1.71.0.tar.gz
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seqLogo.pdf |seqLogo.html✨
seqLogo/json (API)
NEWS

# Install 'seqLogo' in R:
install.packages('seqLogo', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ivanek/seqlogo/issues

On BioConductor:seqLogo-1.71.0(bioc 3.20)seqLogo-1.70.0(bioc 3.19)

bioconductor-package

8 exports 4.95 score 0 dependencies 29 dependents 24 mentions

Last updated 2 months agofrom:5c2c8898aa

Exports:consensusicmakePWMplotpwmseqLogoshowsummary

Dependencies:

Sequence logos for DNA sequence alignments

Oliver Bembom, Robert Ivánek

Rendered fromseqLogo.Rmdusingknitr::rmarkdownon Jul 03 2024.

Last update: 2020-05-08
Started: 2020-05-08

Readme and manuals

Help Manual

Help pageTopics
Constructing a pwm objectmakePWM
An S4 class to represent a PWM matrix.alphabet consensus consensus,pwm-method ic ic,pwm-method plot,pwm,ANY-method pwm pwm,pwm-method pwm-class show,pwm-method summary,pwm-method
Plot a sequence logo for a given position weight matrixseqLogo