Package: scmeth 1.33.0

Divy Kangeyan

scmeth: Functions to conduct quality control analysis in methylation data

Functions to analyze methylation data can be found here. Some functions are relevant for single cell methylation data but most other functions can be used for any methylation data. Highlight of this workflow is the comprehensive quality control report.

Authors:Divy Kangeyan <[email protected]>

scmeth_1.33.0.tar.gz
scmeth_1.33.0.zip(r-4.7)scmeth_1.33.0.zip(r-4.6)scmeth_1.33.0.zip(r-4.5)
scmeth_1.33.0.tgz(r-4.6-any)scmeth_1.33.0.tgz(r-4.5-any)
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scmeth_1.33.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
scmeth/json (API)
NEWS

# Install 'scmeth' in R:
install.packages('scmeth', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/aryeelab/scmeth/issues

On BioConductor:scmeth-1.33.0(bioc 3.24)scmeth-1.32.0(bioc 3.23)

dnamethylationqualitycontrolpreprocessingsinglecellimmunooncologybioconductor-packagemethylationsingle-cell-methylation

4.88 score 8 scripts 332 downloads 1 mentions 12 exports 152 dependencies

Last updated from:f2ec0ad675. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR365
linux-devel-x86_64NOTE657
source / vignettesOK450
linux-release-x86_64NOTE681
macos-release-arm64NOTE346
macos-oldrel-arm64NOTE384
windows-develNOTE490
windows-releaseNOTE518
windows-oldrelNOTE520
wasm-releaseOK330

Exports:bsConversionPlotchromosomeCoveragecoveragecpgDensitycpgDiscretizationdownsamplefeatureCoveragembiasplotmethylationDistreadmetricsrepMaskreport

Dependencies:abindAnnotationDbiAnnotationHubannotatraskpassassortheadbase64encbeachmatBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIObiocmakeBiocManagerBiocParallelBiocVersionBiostringsbitbit64bitopsblobBSgenomebslibbsseqcachemcigarilloclicliprcodetoolscpp11crayoncrosstalkcurldata.tableDBIdbplyrDelayedArrayDelayedMatrixStatsdigestdir.expirydplyrDTevaluatefarverfastmapfilelockfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegtablegtoolsh5mreadHDF5Arrayhighrhmshtmltoolshtmlwidgetshttrhttr2IRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalocfitmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslotelpermutepillarpkgconfigplyrpngprettyunitsprogresspromisespurrrR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRCurlreadrregioneRreshape2restfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrmarkdownRsamtoolsRSQLitertracklayerS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytextzdbUCSC.utilsutf8vctrsviridisLitevroomwithrxfunXMLXVectoryaml

scmeth Vignette

Divy S. Kangeyan

Rendered frommy-vignette.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2019-01-09
Started: 2017-03-28