Package: schex 1.21.0

Saskia Freytag

schex: Hexbin plots for single cell omics data

Builds hexbin plots for variables and dimension reduction stored in single cell omics data such as SingleCellExperiment. The ideas used in this package are based on the excellent work of Dan Carr, Nicholas Lewin-Koh, Martin Maechler and Thomas Lumley.

Authors:Saskia Freytag [aut, cre], Wancheng Tang [ctb], Zimo Peng [ctb], Jingxiu Huang [ctb]

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schex.pdf |schex.html✨
schex/json (API)
NEWS

# Install 'schex' in R:
install.packages('schex', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/saskiafreytag/schex/issues

On BioConductor:schex-1.21.0(bioc 3.21)schex-1.20.0(bioc 3.20)

softwaresequencingsinglecelldimensionreductionvisualizationimmunooncologydataimport

8.96 score 74 stars 2 packages 102 scripts 392 downloads 10 exports 78 dependencies

Last updated 4 months agofrom:6af9fd53d1. Checks:4 OK, 2 NOTE, 1 WARNING, 1 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 12 2025
R-4.5-winNOTEFeb 12 2025
R-4.5-macWARNINGFeb 12 2025
R-4.5-linuxNOTEFeb 12 2025
R-4.4-winOKFeb 12 2025
R-4.4-macOKFeb 12 2025
R-4.3-winOKFeb 12 2025
R-4.3-macERRORFeb 12 2025

Exports:make_hexbinmake_hexbin_labelplot_hexbin_bivariateplot_hexbin_densityplot_hexbin_fcplot_hexbin_featureplot_hexbin_feature_plusplot_hexbin_interactplot_hexbin_metaplot_hexbin_meta_plus

Dependencies:abindaskpassBiobaseBiocGenericsclassclassIntcliclustercolorspaceconcavemancpp11crayoncurlDBIDelayedArraydplyre1071entropyfansifarvergenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggforceggplot2gluegtablehexbinhttrIRangesisobandjsonliteKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimemunsellnlmeopensslpillarpkgconfigpolyclipproxyR6RColorBrewerRcppRcppEigenrlangs2S4ArraysS4VectorsscalessfSingleCellExperimentSparseArraySummarizedExperimentsyssystemfontstibbletidyselecttweenrUCSC.utilsunitsutf8V8vctrsviridisLitewithrwkXVector

Using schex with Seurat

Rendered fromSeurat_to_SCE.Rmdusingknitr::rmarkdownon Feb 12 2025.

Last update: 2024-01-30
Started: 2024-01-30

Plotting single cell data with schex

Saskia Freytag

Rendered fromusing_schex.Rmdusingknitr::rmarkdownon Feb 12 2025.

Last update: 2024-01-30
Started: 2019-06-25