Package: schex 1.21.0

Saskia Freytag

schex: Hexbin plots for single cell omics data

Builds hexbin plots for variables and dimension reduction stored in single cell omics data such as SingleCellExperiment. The ideas used in this package are based on the excellent work of Dan Carr, Nicholas Lewin-Koh, Martin Maechler and Thomas Lumley.

Authors:Saskia Freytag [aut, cre], Wancheng Tang [ctb], Zimo Peng [ctb], Jingxiu Huang [ctb]

schex_1.21.0.tar.gz
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schex_1.21.0.tgz(r-4.4-any)schex_1.21.0.tgz(r-4.3-any)
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schex.pdf |schex.html
schex/json (API)
NEWS

# Install 'schex' in R:
install.packages('schex', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/saskiafreytag/schex/issues

On BioConductor:schex-1.21.0(bioc 3.21)schex-1.20.0(bioc 3.20)

softwaresequencingsinglecelldimensionreductionvisualizationimmunooncologydataimport

9.13 score 74 stars 2 packages 102 scripts 380 downloads 10 exports 78 dependencies

Last updated 3 months agofrom:6af9fd53d1. Checks:3 OK, 2 NOTE, 2 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 13 2025
R-4.5-winNOTEJan 13 2025
R-4.5-linuxNOTEJan 13 2025
R-4.4-winOKJan 13 2025
R-4.4-macERRORJan 13 2025
R-4.3-winOKJan 13 2025
R-4.3-macERRORJan 13 2025

Exports:make_hexbinmake_hexbin_labelplot_hexbin_bivariateplot_hexbin_densityplot_hexbin_fcplot_hexbin_featureplot_hexbin_feature_plusplot_hexbin_interactplot_hexbin_metaplot_hexbin_meta_plus

Dependencies:abindaskpassBiobaseBiocGenericsclassclassIntcliclustercolorspaceconcavemancpp11crayoncurlDBIDelayedArraydplyre1071entropyfansifarvergenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggforceggplot2gluegtablehexbinhttrIRangesisobandjsonliteKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimemunsellnlmeopensslpillarpkgconfigpolyclipproxyR6RColorBrewerRcppRcppEigenrlangs2S4ArraysS4VectorsscalessfSingleCellExperimentSparseArraySummarizedExperimentsyssystemfontstibbletidyselecttweenrUCSC.utilsunitsutf8V8vctrsviridisLitewithrwkXVector

Using schex with Seurat

Rendered fromSeurat_to_SCE.Rmdusingknitr::rmarkdownon Jan 13 2025.

Last update: 2024-01-30
Started: 2024-01-30

Plotting single cell data with schex

Rendered fromusing_schex.Rmdusingknitr::rmarkdownon Jan 13 2025.

Last update: 2024-01-30
Started: 2019-06-25