Package: scRecover 1.29.0

Zhun Miao

scRecover: scRecover for imputation of single-cell RNA-seq data

scRecover is an R package for imputation of single-cell RNA-seq (scRNA-seq) data. It will detect and impute dropout values in a scRNA-seq raw read counts matrix while keeping the real zeros unchanged, since there are both dropout zeros and real zeros in scRNA-seq data. By combination with scImpute, SAVER and MAGIC, scRecover not only detects dropout and real zeros at higher accuracy, but also improve the downstream clustering and visualization results.

Authors:Zhun Miao, Xuegong Zhang <[email protected]>

scRecover_1.29.0.tar.gz
scRecover_1.29.0.zip(r-4.7)scRecover_1.29.0.zip(r-4.6)scRecover_1.29.0.zip(r-4.5)
scRecover_1.29.0.tgz(r-4.6-any)scRecover_1.29.0.tgz(r-4.5-any)
scRecover_1.29.0.tar.gz(r-4.7-any)scRecover_1.29.0.tar.gz(r-4.6-any)
scRecover_1.29.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
scRecover/json (API)
NEWS

# Install 'scRecover' in R:
install.packages('scRecover', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/miaozhun/screcover/issues

Datasets:
  • counts - ScRecoverTest: A test dataset for scRecover
  • labels - ScRecoverTest: A test dataset for scRecover
  • oneCell - ScRecoverTest: A test dataset for scRecover

On BioConductor:scRecover-1.29.0(bioc 3.24)scRecover-1.28.0(bioc 3.23)

geneexpressionsinglecellrnaseqtranscriptomicssequencingpreprocessingsoftware

5.46 score 9 stars 16 scripts 391 downloads 1 mentions 4 exports 36 dependencies

Last updated from:51539c4d16. Checks:1 ERROR, 2 NOTE, 2 OK, 5 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR157
linux-devel-x86_64NOTE287
source / vignettesOK290
linux-release-x86_64NOTE220
macos-release-arm64FAIL80
macos-oldrel-arm64FAIL84
windows-develFAIL76
windows-releaseFAIL81
windows-oldrelFAIL75
wasm-releaseOK126

Exports:countsSamplingestDropoutNumnormalizationscRecover

Dependencies:bbmlebdsmatrixBHBiocParallelcodetoolscpp11doParallelforeachformatRfutile.loggerfutile.optionsgamlssgamlss.datagamlss.distglmnetiteratorskernlablambda.rlatticeMASSMatrixmvtnormnlmenumDerivpenalizedpolynompreseqRpsclRcppRcppArmadilloRcppEigenrsvdSAVERshapesnowsurvival

scRecover

Rendered fromscRecover.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2019-04-28
Started: 2019-02-19