Package: scReClassify 1.13.0
Taiyun Kim
scReClassify: scReClassify: post hoc cell type classification of single-cell RNA-seq data
A post hoc cell type classification tool to fine-tune cell type annotations generated by any cell type classification procedure with semi-supervised learning algorithm AdaSampling technique. The current version of scReClassify supports Support Vector Machine and Random Forest as a base classifier.
Authors:
scReClassify_1.13.0.tar.gz
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scReClassify_1.13.0.tgz(r-4.4-any)scReClassify_1.13.0.tgz(r-4.3-any)
scReClassify_1.13.0.tar.gz(r-4.5-noble)scReClassify_1.13.0.tar.gz(r-4.4-noble)
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scReClassify.pdf |scReClassify.html✨
scReClassify/json (API)
NEWS
| # Install 'scReClassify' in R: |
| install.packages('scReClassify', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sydneybiox/screclassify/issues
- gse87795_subset_sce - GSE827795 subset data
On BioConductor:scReClassify-1.13.0(bioc 3.21)scReClassify-1.12.0(bioc 3.20)
softwaretranscriptomicssinglecellclassificationsupportvectormachine
Last updated 23 days agofrom:5cefdbe3f9. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 18 2024 |
| R-4.5-win | WARNING | Nov 18 2024 |
| R-4.5-linux | WARNING | Nov 18 2024 |
| R-4.4-win | WARNING | Nov 18 2024 |
| R-4.4-mac | WARNING | Nov 18 2024 |
| R-4.3-win | WARNING | Nov 18 2024 |
| R-4.3-mac | WARNING | Nov 18 2024 |
Exports:bAccuracymatPCsmultiAdaSampling
Dependencies:abindaskpassBiobaseBiocGenericsclasscrayoncurlDelayedArraye1071genericsGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrIRangesjsonlitelatticeMASSMatrixMatrixGenericsmatrixStatsmimeopensslproxyR6randomForestS4ArraysS4VectorsSingleCellExperimentSparseArraySummarizedExperimentsysUCSC.utilsXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| bAccuracy | bAccuracy |
| GSE827795 subset data | gse87795_subset_sce |
| matPCs function | matPCs |
| multi Adaptive Sampling function | multiAdaSampling |
| scReClassify: a package for post hoc cell type classification of single-cell RNA-sequencing data. | scReClassify |
