Package: scFeatureFilter 1.25.0
scFeatureFilter: A correlation-based method for quality filtering of single-cell RNAseq data
An R implementation of the correlation-based method developed in the Joshi laboratory to analyse and filter processed single-cell RNAseq data. It returns a filtered version of the data containing only genes expression values unaffected by systematic noise.
Authors:
scFeatureFilter_1.25.0.tar.gz
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scFeatureFilter.pdf |scFeatureFilter.html✨
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NEWS
# Install 'scFeatureFilter' in R: |
install.packages('scFeatureFilter', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- scData_hESC - Expression data from 32 human embryonic stem cells
On BioConductor:scFeatureFilter-1.25.0(bioc 3.20)scFeatureFilter-1.24.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:14c90ee3fe
Exports:bin_scdatacalculate_cvscorrelate_windowscorrelations_to_densitiesdefine_top_genesdetermine_bin_cutofffilter_expression_tableget_mean_medianplot_correlations_distributionsplot_mean_varianceplot_metricplot_top_window_autocorsc_feature_filter
Dependencies:clicolorspacedplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalestibbletidyselectutf8vctrsviridisLitewithr