Package: scDotPlot 1.1.0

Benjamin I Laufer

scDotPlot: Cluster a Single-cell RNA-seq Dot Plot

Dot plots of single-cell RNA-seq data allow for an examination of the relationships between cell groupings (e.g. clusters) and marker gene expression. The scDotPlot package offers a unified approach to perform a hierarchical clustering analysis and add annotations to the columns and/or rows of a scRNA-seq dot plot. It works with SingleCellExperiment and Seurat objects as well as data frames.

Authors:Benjamin I Laufer [aut, cre], Brad A Friedman [aut]

scDotPlot_1.1.0.tar.gz
scDotPlot_1.1.0.zip(r-4.5)scDotPlot_1.1.0.zip(r-4.4)
scDotPlot_1.1.0.tgz(r-4.5-any)scDotPlot_1.1.0.tgz(r-4.4-any)
scDotPlot_1.1.0.tar.gz(r-4.5-noble)scDotPlot_1.1.0.tar.gz(r-4.4-noble)
scDotPlot_1.1.0.tgz(r-4.4-emscripten)
scDotPlot.pdf |scDotPlot.html
scDotPlot/json (API)
NEWS

# Install 'scDotPlot' in R:
install.packages('scDotPlot', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ben-laufer/scdotplot/issues

On BioConductor:scDotPlot-1.1.0(bioc 3.21)scDotPlot-1.0.0(bioc 3.20)

softwarevisualizationdifferentialexpressiongeneexpressiontranscriptionrnaseqsinglecellsequencingclustering

4.85 score 2 stars 2 scripts 112 downloads 1 exports 196 dependencies

Last updated 4 months agofrom:4a5ac124af. Checks:5 OK, 1 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 16 2025
R-4.5-winOKFeb 16 2025
R-4.5-macWARNINGFeb 16 2025
R-4.5-linuxOKFeb 16 2025
R-4.4-winOKFeb 16 2025
R-4.4-macOKFeb 16 2025

Exports:scDotPlot

Dependencies:abindapeaplotaskpassassortheadbase64encbeachmatbeeswarmBHBiobaseBiocGenericsBiocNeighborsBiocParallelBiocSingularbitopsbslibcachemCairocaToolscliclustercodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkcurldata.tableDelayedArraydeldirdigestdotCall64dplyrdqrngevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomeformatRfsfutile.loggerfutile.optionsfuturefuture.applygenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggbeeswarmggfunggplot2ggplotifyggrastrggrepelggridgesggsciggtreeglobalsgluegoftestgplotsgridExtragridGraphicsgtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphIRangesirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglambda.rlaterlatticelazyevalleidenbaselifecyclelistenvlmtestmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminiUImunsellnlmeopensslparallellypatchworkpbapplypheatmappillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrR6raggRANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppMLRcppProgressRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectrarsvdRtsneS4ArraysS4VectorssassScaledMatrixscalesscaterscattermoresctransformscuttleSeuratSeuratObjectshinySingleCellExperimentsitmosnowsourcetoolsspspamSparseArrayspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrSummarizedExperimentsurvivalsyssystemfontstensortextshapingtibbletidyrtidyselecttidytreetinytextreeioUCSC.utilsutf8uwotvctrsviporviridisviridisLitewithrxfunxtableXVectoryamlyulab.utilszoo

scDotPlot

Rendered fromscDotPlot.Rmdusingknitr::rmarkdownon Feb 16 2025.

Last update: 2024-09-17
Started: 2024-05-16

Readme and manuals

Help Manual

Help pageTopics
scDotPlotscDotPlot scDotPlot.default scDotPlot.Seurat scDotPlot.SingleCellExperiment