Package: scDotPlot 0.99.3

Benjamin I Laufer

scDotPlot: Cluster a Single-cell RNA-seq Dot Plot

Dot plots of single-cell RNA-seq data allow for an examination of the relationships between cell groupings (e.g. clusters) and marker gene expression. The scDotPlot package offers a unified approach to perform a hierarchical clustering analysis and add annotations to the columns and/or rows of a scRNA-seq dot plot. It works with SingleCellExperiment and Seurat objects as well as data frames.

Authors:Benjamin I Laufer [aut, cre], Brad A Friedman [aut]

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scDotPlot.pdf |scDotPlot.html✨
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NEWS

# Install 'scDotPlot' in R:

install.packages('scDotPlot', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ben-laufer/scdotplot/issues

On BioConductor:scDotPlot-0.99.2(bioc 3.20)

bioconductor-package

1 exports 0.49 score 197 dependencies

Last updated 7 days agofrom:b8606e8e26

Exports:scDotPlot

Dependencies:abind ape aplot askpass base64enc beachmat beeswarm BH Biobase BiocGenerics BiocNeighbors BiocParallel BiocSingular bitops bslib cachem Cairo caTools cli cluster codetools colorspace commonmark cowplot cpp11 crayon crosstalk curl data.table DelayedArray DelayedMatrixStats deldir digest dotCall64 dplyr dqrng evaluate fansi farver fastDummies fastmap fitdistrplus FNN fontawesome formatR fs futile.logger futile.options future future.apply generics GenomeInfoDb GenomeInfoDbData GenomicRanges ggbeeswarm ggfun ggplot2 ggplotify ggrastr ggrepel ggridges ggsci ggtree globals glue goftest gplots gridExtra gridGraphics gtable gtools here highr htmltools htmlwidgets httpuv httr ica igraph IRanges irlba isoband jquerylib jsonlite KernSmooth knitr labeling lambda.r later lattice lazyeval leiden lifecycle listenv lmtest magrittr MASS Matrix MatrixGenerics matrixStats memoise mgcv mime miniUI munsell nlme openssl parallelly patchwork pbapply pheatmap pillar pkgconfig plotly plyr png polyclip progressr promises purrr R6 ragg RANN rappdirs RColorBrewer Rcpp RcppAnnoy RcppArmadillo RcppEigen RcppHNSW RcppML RcppProgress RcppTOML reshape2 reticulate rlang rmarkdown ROCR rprojroot RSpectra rsvd Rtsne S4Arrays S4Vectors sass ScaledMatrix scales scater scattermore sctransform scuttle Seurat SeuratObject shiny SingleCellExperiment sitmo snow sourcetools sp spam SparseArray sparseMatrixStats spatstat.data spatstat.explore spatstat.geom spatstat.random spatstat.sparse spatstat.utils stringi stringr SummarizedExperiment survival sys systemfonts tensor textshaping tibble tidyr tidyselect tidytree tinytex treeio UCSC.utils utf8 uwot vctrs vipor viridis viridisLite withr xfun xtable XVector yaml yulab.utils zlibbioc zoo

scDotPlot

Ben Laufer

Rendered fromscDotPlot.Rmdusingknitr::rmarkdownon Jul 04 2024.

Last update: 2024-06-06
Started: 2024-05-16

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Help page	Topics
scDotPlot	scDotPlot scDotPlot.default scDotPlot.Seurat scDotPlot.SingleCellExperiment