Package: scDotPlot 1.1.0
scDotPlot: Cluster a Single-cell RNA-seq Dot Plot
Dot plots of single-cell RNA-seq data allow for an examination of the relationships between cell groupings (e.g. clusters) and marker gene expression. The scDotPlot package offers a unified approach to perform a hierarchical clustering analysis and add annotations to the columns and/or rows of a scRNA-seq dot plot. It works with SingleCellExperiment and Seurat objects as well as data frames.
Authors:
scDotPlot_1.1.0.tar.gz
scDotPlot_1.1.0.zip(r-4.5)scDotPlot_1.1.0.zip(r-4.4)
scDotPlot_1.1.0.tgz(r-4.5-any)scDotPlot_1.1.0.tgz(r-4.4-any)
scDotPlot_1.1.0.tar.gz(r-4.5-noble)scDotPlot_1.1.0.tar.gz(r-4.4-noble)
scDotPlot_1.1.0.tgz(r-4.4-emscripten)
scDotPlot.pdf |scDotPlot.html✨
scDotPlot/json (API)
NEWS
# Install 'scDotPlot' in R: |
install.packages('scDotPlot', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ben-laufer/scdotplot/issues
On BioConductor:scDotPlot-1.1.0(bioc 3.21)scDotPlot-1.0.0(bioc 3.20)
softwarevisualizationdifferentialexpressiongeneexpressiontranscriptionrnaseqsinglecellsequencingclustering
Last updated 4 months agofrom:4a5ac124af. Checks:5 OK, 1 WARNING. Indexed: yes.
Target | Result | Latest binary |
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Doc / Vignettes | OK | Feb 16 2025 |
R-4.5-win | OK | Feb 16 2025 |
R-4.5-mac | WARNING | Feb 16 2025 |
R-4.5-linux | OK | Feb 16 2025 |
R-4.4-win | OK | Feb 16 2025 |
R-4.4-mac | OK | Feb 16 2025 |
Exports:scDotPlot
Dependencies:abindapeaplotaskpassassortheadbase64encbeachmatbeeswarmBHBiobaseBiocGenericsBiocNeighborsBiocParallelBiocSingularbitopsbslibcachemCairocaToolscliclustercodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkcurldata.tableDelayedArraydeldirdigestdotCall64dplyrdqrngevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomeformatRfsfutile.loggerfutile.optionsfuturefuture.applygenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggbeeswarmggfunggplot2ggplotifyggrastrggrepelggridgesggsciggtreeglobalsgluegoftestgplotsgridExtragridGraphicsgtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphIRangesirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglambda.rlaterlatticelazyevalleidenbaselifecyclelistenvlmtestmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminiUImunsellnlmeopensslparallellypatchworkpbapplypheatmappillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrR6raggRANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppMLRcppProgressRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectrarsvdRtsneS4ArraysS4VectorssassScaledMatrixscalesscaterscattermoresctransformscuttleSeuratSeuratObjectshinySingleCellExperimentsitmosnowsourcetoolsspspamSparseArrayspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrSummarizedExperimentsurvivalsyssystemfontstensortextshapingtibbletidyrtidyselecttidytreetinytextreeioUCSC.utilsutf8uwotvctrsviporviridisviridisLitewithrxfunxtableXVectoryamlyulab.utilszoo
Readme and manuals
Help Manual
Help page | Topics |
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scDotPlot | scDotPlot scDotPlot.default scDotPlot.Seurat scDotPlot.SingleCellExperiment |