Package: safe 3.45.0

Ludwig Geistlinger

safe: Significance Analysis of Function and Expression

SAFE is a resampling-based method for testing functional categories in gene expression experiments. SAFE can be applied to 2-sample and multi-class comparisons, or simple linear regressions. Other experimental designs can also be accommodated through user-defined functions.

Authors:William T. Barry

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On BioConductor:safe-3.45.0(bioc 3.20)safe-3.44.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

26 exports 2.00 score 39 dependencies 5 dependents 4 mentions

Last updated 2 months agofrom:0dddf91867

Exports:error.FDR.BHerror.FDR.YBerror.FWER.Bonferror.FWER.Holmerror.FWER.WYgene.resultsgetCmatrixgetCOXresidualsgetPIcompletegetPImatrixgetXYresidualsglobal.AveDiffglobal.Fisherglobal.Kolmogorovglobal.Pearsonglobal.Wilcoxonlocal.f.ANOVAlocal.t.LMlocal.t.pairedlocal.t.Studentlocal.t.Welchsafesafe.toptablesafedagsafeplotsigfig

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapGenomeInfoDbGenomeInfoDbDatagluehttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorsSparseMsysUCSC.utilsvctrsXVectorzlibbioc