Package: runibic 1.29.0

Patryk Orzechowski

runibic: runibic: row-based biclustering algorithm for analysis of gene expression data in R

This package implements UbiBic algorithm in R. This biclustering algorithm for analysis of gene expression data was introduced by Zhenjia Wang et al. in 2016. It is currently considered the most promising biclustering method for identification of meaningful structures in complex and noisy data.

Authors:Patryk Orzechowski, Artur Pańszczyk

runibic_1.29.0.tar.gz
runibic_1.29.0.zip(r-4.5)runibic_1.29.0.zip(r-4.4)runibic_1.29.0.zip(r-4.3)

runibic_1.29.0.tar.gz(r-4.5-noble)runibic_1.29.0.tar.gz(r-4.4-noble)
runibic.pdf |runibic.html
runibic/json (API)
NEWS

# Install 'runibic' in R:
install.packages('runibic', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/athril/runibic/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library

On BioConductor:runibic-1.29.0(bioc 3.21)runibic-1.28.0(bioc 3.20)

microarrayclusteringgeneexpressionsequencingcoveragecppopenmp

5.20 score 4 stars 7 scripts 248 downloads 2 mentions 10 exports 81 dependencies

Last updated 5 months agofrom:c55baab949. Checks:1 OK, 4 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 25 2025
R-4.5-win-x86_64NOTEFeb 25 2025
R-4.5-linux-x86_64NOTEFeb 25 2025
R-4.4-win-x86_64NOTEFeb 25 2025
R-4.3-win-x86_64NOTEFeb 25 2025

Exports:backtrackLCSBCUnibicBCUnibicDcalculateLCSclusterpairwiseLCSrunibicruniDiscretizeset_runibic_paramsunisort

Dependencies:abindadditivityTestsaskpassbiclustBiobaseBiocGenericsbriocallrclassclicolorspacecpp11crayoncurlDelayedArraydescdiffobjdigestdplyrevaluatefansifarverflexclustfsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimemodeltoolsmunsellnlmeopensslpillarpkgbuildpkgconfigpkgloadpraiseprocessxpspurrrR6RColorBrewerRcpprlangrprojrootS4ArraysS4VectorsscalesSparseArraystringistringrSummarizedExperimentsystestthattibbletidyrtidyselectUCSC.utilsutf8vctrsviridisLitewaldowithrXVector

runibic: UniBic in R Tutorial

Rendered fromrunibic.Rmdusingknitr::rmarkdownon Feb 25 2025.

Last update: 2018-09-20
Started: 2017-10-04