Package: rsemmed 1.17.0

Leslie Myint

rsemmed: An interface to the Semantic MEDLINE database

A programmatic interface to the Semantic MEDLINE database. It provides functions for searching the database for concepts and finding paths between concepts. Path searching can also be tailored to user specifications, such as placing restrictions on concept types and the type of link between concepts. It also provides functions for summarizing and visualizing those paths.

Authors:Leslie Myint [aut, cre]

rsemmed_1.17.0.tar.gz
rsemmed_1.17.0.zip(r-4.5)rsemmed_1.17.0.zip(r-4.4)rsemmed_1.17.0.zip(r-4.3)
rsemmed_1.17.0.tgz(r-4.4-any)rsemmed_1.17.0.tgz(r-4.3-any)
rsemmed_1.17.0.tar.gz(r-4.5-noble)rsemmed_1.17.0.tar.gz(r-4.4-noble)
rsemmed_1.17.0.tgz(r-4.4-emscripten)rsemmed_1.17.0.tgz(r-4.3-emscripten)
rsemmed.pdf |rsemmed.html✨
rsemmed/json (API)
NEWS

# Install 'rsemmed' in R:
install.packages('rsemmed', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lmyint/rsemmed/issues

Datasets:
  • g_mini - Example data for the rsemmed package
  • g_small - Example data for the rsemmed package

On BioConductor:rsemmed-1.17.0(bioc 3.21)rsemmed-1.16.0(bioc 3.20)

softwareannotationpathwayssystemsbiology

4.00 score 8 scripts 170 downloads 10 exports 22 dependencies

Last updated 4 months agofrom:7e5464b3dd. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 25 2025
R-4.5-winOKJan 25 2025
R-4.5-linuxOKJan 25 2025
R-4.4-winOKJan 25 2025
R-4.4-macOKJan 25 2025
R-4.3-winOKJan 25 2025
R-4.3-macOKJan 25 2025

Exports:find_nodesfind_pathsget_edge_featuresget_middle_nodesgrow_nodesmake_edge_weightsplot_pathsummarize_predicatessummarize_semtypestext_path

Dependencies:clicpp11dplyrfansigenericsglueigraphlatticelifecyclemagrittrMatrixpillarpkgconfigR6rlangstringistringrtibbletidyselectutf8vctrswithr

The rsemmed User's Guide

Leslie Myint

Rendered fromrsemmed_user_guide.Rmdusingknitr::rmarkdownon Jan 25 2025.

Last update: 2020-09-12
Started: 2020-08-16