Package: rsemmed 1.17.0

Leslie Myint

rsemmed: An interface to the Semantic MEDLINE database

A programmatic interface to the Semantic MEDLINE database. It provides functions for searching the database for concepts and finding paths between concepts. Path searching can also be tailored to user specifications, such as placing restrictions on concept types and the type of link between concepts. It also provides functions for summarizing and visualizing those paths.

Authors:Leslie Myint [aut, cre]

rsemmed_1.17.0.tar.gz
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rsemmed.pdf |rsemmed.html✨
rsemmed/json (API)
NEWS

# Install 'rsemmed' in R:
install.packages('rsemmed', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/lmyint/rsemmed/issues

Datasets:
  • g_mini - Example data for the rsemmed package
  • g_small - Example data for the rsemmed package

On BioConductor:rsemmed-1.17.0(bioc 3.21)rsemmed-1.16.0(bioc 3.20)

softwareannotationpathwayssystemsbiology

4.00 score 8 scripts 128 downloads 10 exports 22 dependencies

Last updated 2 months agofrom:7e5464b3dd. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 26 2024
R-4.5-winOKNov 26 2024
R-4.5-linuxOKNov 26 2024
R-4.4-winOKNov 26 2024
R-4.4-macOKNov 26 2024
R-4.3-winOKNov 26 2024
R-4.3-macOKNov 26 2024

Exports:find_nodesfind_pathsget_edge_featuresget_middle_nodesgrow_nodesmake_edge_weightsplot_pathsummarize_predicatessummarize_semtypestext_path

Dependencies:clicpp11dplyrfansigenericsglueigraphlatticelifecyclemagrittrMatrixpillarpkgconfigR6rlangstringistringrtibbletidyselectutf8vctrswithr

The rsemmed User's Guide

Leslie Myint

Rendered fromrsemmed_user_guide.Rmdusingknitr::rmarkdownon Nov 26 2024.

Last update: 2020-09-12
Started: 2020-08-16