Introduction | Installation | Basic usage | Melting temperature computation | Approximative methods | Nearest neighbour methods | Perfectly matching sequences | GU wobble base pairs effect | Single mismatch effect | Tandem mismatches effect | Single dangling end effect | Double dangling end effect | Long dangling end effect | Internal loop effect | Single bulge loop effect | Long bulge loop effect | CNG repeats effect | Inosine bases effect | Hydroxyadenine bases effect | Azobenzenes effect | Single Locked nucleic acid effect | Consecutive Locked nucleic acids effect | Consecutive Locked nucleic acids with a single mismatch effect | Corrections | Nucleic acid concentration | Ion corrections | Sodium corrections | Magnesium corrections | Mixed Sodium and Magnesium corrections | Sodium equivalent concentration methods | Denaturing agent corrections | DMSO corrections | Formamide corrections | Equivalent options in MELTING 5 | Batch computation | Further reading | Citing rmelting | Session Info | References
Package: rmelting 1.29.0
J. Aravind
rmelting: R Interface to MELTING 5
R interface to the MELTING 5 program (https://www.ebi.ac.uk/biomodels/tools/melting/) to compute melting temperatures of nucleic acid duplexes along with other thermodynamic parameters.
Authors:
rmelting_1.29.0.tar.gz
rmelting_1.29.0.zip(r-4.7)rmelting_1.29.0.zip(r-4.6)rmelting_1.29.0.zip(r-4.5)
rmelting_1.29.0.tgz(r-4.6-any)rmelting_1.29.0.tgz(r-4.5-any)
rmelting_1.29.0.tar.gz(r-4.7-any)rmelting_1.29.0.tar.gz(r-4.6-any)
rmelting_1.29.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rmelting/json (API)
| # Install 'rmelting' in R: |
| install.packages('rmelting', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/aravind-j/rmelting/issues
Pkgdown/docs site:https://aravind-j.github.io
On BioConductor:rmelting-1.29.0(bioc 3.24)rmelting-1.28.0(bioc 3.23)
biomedicalinformaticscheminformaticsbioconductorbioinformaticsmelting-temperatureopenjdk
Last updated from:37ba369977. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 156 | ||
| linux-devel-x86_64 | NOTE | 200 | ||
| source / vignettes | OK | 187 | ||
| linux-release-x86_64 | NOTE | 209 | ||
| macos-release-arm64 | NOTE | 87 | ||
| macos-oldrel-arm64 | NOTE | 163 | ||
| windows-devel | NOTE | 111 | ||
| windows-release | NOTE | 98 | ||
| windows-oldrel | NOTE | 82 | ||
| wasm-release | OK | 134 |
Exports:meltingmeltingBatch
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compute melting temperature of a nucleic acid duplex | melting |
| Compute melting temperature of multiple nucleic acid duplexes in batch | meltingBatch |
| Prints melting temperature from a 'melting' object | print.melting |