Package: rgoslin 1.17.0

Nils Hoffmann

rgoslin: Lipid Shorthand Name Parsing and Normalization

The R implementation for the Grammar of Succint Lipid Nomenclature parses different short hand notation dialects for lipid names. It normalizes them to a standard name. It further provides calculated monoisotopic masses and sum formulas for each successfully parsed lipid name and supplements it with LIPID MAPS Category and Class information. Also, the structural level and further structural details about the head group, fatty acyls and functional groups are returned, where applicable.

Authors:Nils Hoffmann [aut, cre], Dominik Kopczynski [aut]

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manual.pdf |manual.html✨
card.svg |card.png
rgoslin/json (API)
NEWS

# Install 'rgoslin' in R:
install.packages('rgoslin', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lifs-tools/rgoslin/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:rgoslin-1.17.0(bioc 3.24)rgoslin-1.16.0(bioc 3.23)

softwarelipidomicsmetabolomicspreprocessingnormalizationmassspectrometrycpp

5.64 score 6 stars 36 scripts 434 downloads 3 exports 16 dependencies

Last updated from:788f2b9664. Checks:11 WARNING, 1 OK, 1 NOTE, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING251
linux-devel-arm64WARNING232
linux-devel-x86_64WARNING455
source / vignettesOK404
linux-release-arm64WARNING241
linux-release-x86_64WARNING339
macos-release-arm64WARNING173
macos-release-x86_64WARNING684
macos-oldrel-arm64WARNING196
macos-oldrel-x86_64WARNING375
windows-develWARNING226
windows-releaseWARNING231
windows-oldrelNOTE201
wasm-releaseFAIL146

Exports:isValidLipidNamelistAvailableGrammarsparseLipidNames

Dependencies:clidplyrgenericsgluelifecyclemagrittrpillarpkgconfigR6Rcpprlangtibbletidyselectutf8vctrswithr

Using rgoslin to parse and normalize lipid nomenclature

Nils Hoffmann

Rendered fromintroduction.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2022-03-24
Started: 2022-01-11