Package: rgoslin 1.11.0

Nils Hoffmann

rgoslin: Lipid Shorthand Name Parsing and Normalization

The R implementation for the Grammar of Succint Lipid Nomenclature parses different short hand notation dialects for lipid names. It normalizes them to a standard name. It further provides calculated monoisotopic masses and sum formulas for each successfully parsed lipid name and supplements it with LIPID MAPS Category and Class information. Also, the structural level and further structural details about the head group, fatty acyls and functional groups are returned, where applicable.

Authors:Nils Hoffmann [aut, cre], Dominik Kopczynski [aut]

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NEWS

# Install 'rgoslin' in R:
install.packages('rgoslin', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/lifs-tools/rgoslin/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:rgoslin-1.11.0(bioc 3.21)rgoslin-1.10.0(bioc 3.20)

softwarelipidomicsmetabolomicspreprocessingnormalizationmassspectrometry

5.58 score 5 stars 19 scripts 201 downloads 3 exports 17 dependencies

Last updated 25 days agofrom:f32d084652. Checks:OK: 1 NOTE: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-win-x86_64NOTEOct 31 2024
R-4.5-linux-x86_64NOTEOct 31 2024
R-4.4-win-x86_64NOTEOct 31 2024
R-4.4-mac-x86_64NOTEOct 31 2024
R-4.4-mac-aarch64NOTEOct 31 2024
R-4.3-win-x86_64NOTEOct 31 2024
R-4.3-mac-x86_64NOTEOct 31 2024
R-4.3-mac-aarch64NOTEOct 31 2024

Exports:isValidLipidNamelistAvailableGrammarsparseLipidNames

Dependencies:clidplyrfansigenericsgluelifecyclemagrittrpillarpkgconfigR6Rcpprlangtibbletidyselectutf8vctrswithr

Using rgoslin to parse and normalize lipid nomenclature

Rendered fromintroduction.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2022-03-24
Started: 2022-01-11