Package: rgoslin 1.11.0
Nils Hoffmann
rgoslin: Lipid Shorthand Name Parsing and Normalization
The R implementation for the Grammar of Succint Lipid Nomenclature parses different short hand notation dialects for lipid names. It normalizes them to a standard name. It further provides calculated monoisotopic masses and sum formulas for each successfully parsed lipid name and supplements it with LIPID MAPS Category and Class information. Also, the structural level and further structural details about the head group, fatty acyls and functional groups are returned, where applicable.
Authors:
rgoslin_1.11.0.tar.gz
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rgoslin.pdf |rgoslin.html✨
rgoslin/json (API)
NEWS
| # Install 'rgoslin' in R: |
| install.packages('rgoslin', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lifs-tools/rgoslin/issues
On BioConductor:rgoslin-1.11.0(bioc 3.21)rgoslin-1.10.0(bioc 3.20)
softwarelipidomicsmetabolomicspreprocessingnormalizationmassspectrometrycpp
Last updated 4 months agofrom:f32d084652. Checks:1 OK, 10 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Jan 29 2025 |
| R-4.5-win-x86_64 | NOTE | Jan 29 2025 |
| R-4.5-mac-x86_64 | NOTE | Jan 29 2025 |
| R-4.5-mac-aarch64 | NOTE | Jan 29 2025 |
| R-4.5-linux-x86_64 | NOTE | Jan 29 2025 |
| R-4.4-win-x86_64 | NOTE | Jan 29 2025 |
| R-4.4-mac-x86_64 | NOTE | Jan 29 2025 |
| R-4.4-mac-aarch64 | NOTE | Jan 29 2025 |
| R-4.3-win-x86_64 | NOTE | Jan 29 2025 |
| R-4.3-mac-x86_64 | NOTE | Jan 29 2025 |
| R-4.3-mac-aarch64 | NOTE | Jan 29 2025 |
Exports:isValidLipidNamelistAvailableGrammarsparseLipidNames
Dependencies:clidplyrfansigenericsgluelifecyclemagrittrpillarpkgconfigR6Rcpprlangtibbletidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Check lipid name. | isValidLipidName |
| Return the list of grammars supported by goslin. | listAvailableGrammars |
| Parse multiple lipid names and return a data frame with the results. | parseLipidNames |
