Introduction | Related Projects | Supported nomenclatures | Changes from Version 1 | Installation | Example use cases | Parsing a single lipid name | Parsing multiple lipid names | Parsing IUPAC-compliant Fatty Acid Names | Parsing Adducts | Using rgoslin with lipidr | Getting help & support | Session information
Package: rgoslin 1.17.0
Nils Hoffmann
rgoslin: Lipid Shorthand Name Parsing and Normalization
The R implementation for the Grammar of Succint Lipid Nomenclature parses different short hand notation dialects for lipid names. It normalizes them to a standard name. It further provides calculated monoisotopic masses and sum formulas for each successfully parsed lipid name and supplements it with LIPID MAPS Category and Class information. Also, the structural level and further structural details about the head group, fatty acyls and functional groups are returned, where applicable.
Authors:
rgoslin_1.17.0.tar.gz
rgoslin_1.17.0.zip(r-4.7)rgoslin_1.17.0.zip(r-4.6)rgoslin_1.17.0.zip(r-4.5)
rgoslin_1.17.0.tgz(r-4.6-x86_64)rgoslin_1.17.0.tgz(r-4.6-arm64)rgoslin_1.17.0.tgz(r-4.5-x86_64)rgoslin_1.17.0.tgz(r-4.5-arm64)
rgoslin_1.17.0.tar.gz(r-4.7-arm64)rgoslin_1.17.0.tar.gz(r-4.7-x86_64)rgoslin_1.17.0.tar.gz(r-4.6-arm64)rgoslin_1.17.0.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rgoslin/json (API)
| # Install 'rgoslin' in R: |
| install.packages('rgoslin', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lifs-tools/rgoslin/issues
On BioConductor:rgoslin-1.17.0(bioc 3.24)rgoslin-1.16.0(bioc 3.23)
softwarelipidomicsmetabolomicspreprocessingnormalizationmassspectrometrycpp
Last updated from:788f2b9664. Checks:11 WARNING, 1 OK, 1 NOTE, 1 FAIL. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 251 | ||
| linux-devel-arm64 | WARNING | 254 | ||
| linux-devel-x86_64 | WARNING | 279 | ||
| source / vignettes | OK | 399 | ||
| linux-release-arm64 | WARNING | 257 | ||
| linux-release-x86_64 | WARNING | 288 | ||
| macos-release-arm64 | WARNING | 174 | ||
| macos-release-x86_64 | WARNING | 325 | ||
| macos-oldrel-arm64 | WARNING | 139 | ||
| macos-oldrel-x86_64 | WARNING | 403 | ||
| windows-devel | WARNING | 265 | ||
| windows-release | WARNING | 290 | ||
| windows-oldrel | NOTE | 268 | ||
| wasm-release | FAIL | 187 |
Exports:isValidLipidNamelistAvailableGrammarsparseLipidNames
Dependencies:clidplyrgenericsgluelifecyclemagrittrpillarpkgconfigR6Rcpprlangtibbletidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Check lipid name. | isValidLipidName |
| Return the list of grammars supported by goslin. | listAvailableGrammars |
| Parse multiple lipid names and return a data frame with the results. | parseLipidNames |
