Package: rgoslin 1.9.0

Nils Hoffmann

rgoslin: Lipid Shorthand Name Parsing and Normalization

The R implementation for the Grammar of Succint Lipid Nomenclature parses different short hand notation dialects for lipid names. It normalizes them to a standard name. It further provides calculated monoisotopic masses and sum formulas for each successfully parsed lipid name and supplements it with LIPID MAPS Category and Class information. Also, the structural level and further structural details about the head group, fatty acyls and functional groups are returned, where applicable.

Authors:Nils Hoffmann [aut, cre], Dominik Kopczynski [aut]

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NEWS

# Install 'rgoslin' in R:
install.packages('rgoslin', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/lifs-tools/rgoslin/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:rgoslin-1.9.0(bioc 3.20)rgoslin-1.8.0(bioc 3.19)

bioconductor-package

3 exports 1.00 score 17 dependencies

Last updated 2 months agofrom:c2c9bc99d4

Exports:isValidLipidNamelistAvailableGrammarsparseLipidNames

Dependencies:clidplyrfansigenericsgluelifecyclemagrittrpillarpkgconfigR6Rcpprlangtibbletidyselectutf8vctrswithr

Using rgoslin to parse and normalize lipid nomenclature

Nils Hoffmann

Rendered fromintroduction.Rmdusingknitr::rmarkdownon Jun 17 2024.

Last update: 2022-03-24
Started: 2022-01-11