Package: rfaRm 1.25.2

Lara Selles Vidal

rfaRm: An R interface to the Rfam database

rfaRm provides a client interface to the Rfam database of RNA families. Data that can be retrieved include RNA families, secondary structure images, covariance models, sequences within each family, alignments leading to the identification of a family and secondary structures in the dot-bracket format.

Authors:Lara Selles Vidal, Rafael Ayala, Guy-Bart Stan, Rodrigo Ledesma-Amaro

rfaRm_1.25.2.tar.gz
rfaRm_1.25.2.zip(r-4.7-any)rfaRm_1.25.2.zip(r-4.6-any)rfaRm_1.25.2.zip(r-4.5-any)
rfaRm_1.25.2.tgz(r-4.6-any)rfaRm_1.25.2.tgz(r-4.5-any)
rfaRm_1.25.2.tar.gz(r-4.7-any)rfaRm_1.25.2.tar.gz(r-4.6-any)
rfaRm_1.25.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rfaRm/json (API)

# Install 'rfaRm' in R:
install.packages('rfaRm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:rfaRm-1.25.2(bioc 3.24)rfaRm-1.24.1(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

functionalgenomicsdataimportthirdpartyclientvisualizationmultiplesequencealignment

2.60 score 7 scripts 455 downloads 1 mentions 14 exports 35 dependencies

Last updated from:dcde1210c9. Checks:9 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR169
linux-develERROR304
source / vignettesERROR235
linux-releaseERROR286
macos-releaseERROR193
macos-oldrelERROR184
windows-develERROR180
windows-releaseERROR200
windows-oldrelERROR195
wasm-releaseOK133

Exports:rfamConsensusSecondaryStructurerfamCovarianceModelrfamFamilyAccessionToIDrfamFamilyIDToAccessionrfamFamilySummaryrfamPDBMappingrfamSecondaryStructurePlotrfamSecondaryStructureXMLSVGrfamSeedAlignmentrfamSeedTreerfamSeedTreeImagerfamSequenceRegionsrfamSequenceSearchrfamTextSearchFamilyAccession

Dependencies:askpassBiocGenericsBiostringsclicrayoncurldata.tablegenericsgluehttrIRangesjsonlitelifecyclemagickmagrittrmimeMultipleAlignmentopensslpillarpkgconfigR6RcpprlangrsvgrvestS4VectorsselectrSeqinfostringisystibbleutf8vctrsxml2XVector