Package: rfaRm 1.19.0

Lara Selles Vidal

rfaRm: An R interface to the Rfam database

rfaRm provides a client interface to the Rfam database of RNA families. Data that can be retrieved include RNA families, secondary structure images, covariance models, sequences within each family, alignments leading to the identification of a family and secondary structures in the dot-bracket format.

Authors:Lara Selles Vidal, Rafael Ayala, Guy-Bart Stan, Rodrigo Ledesma-Amaro

rfaRm_1.19.0.tar.gz
rfaRm_1.19.0.zip(r-4.5)rfaRm_1.19.0.zip(r-4.4)rfaRm_1.19.0.zip(r-4.3)
rfaRm_1.19.0.tgz(r-4.5-any)rfaRm_1.19.0.tgz(r-4.4-any)rfaRm_1.19.0.tgz(r-4.3-any)
rfaRm_1.19.0.tar.gz(r-4.5-noble)rfaRm_1.19.0.tar.gz(r-4.4-noble)
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rfaRm.pdf |rfaRm.html✨
rfaRm/json (API)
NEWS

# Install 'rfaRm' in R:
install.packages('rfaRm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:rfaRm-1.19.0(bioc 3.21)rfaRm-1.18.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

functionalgenomicsdataimportthirdpartyclientvisualizationmultiplesequencealignment

3.30 score 1 scripts 188 downloads 1 mentions 14 exports 38 dependencies

Last updated 4 months agofrom:7c62429965. Checks:1 OK, 5 NOTE, 2 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 17 2025
R-4.5-winNOTEFeb 17 2025
R-4.5-macWARNINGFeb 17 2025
R-4.5-linuxNOTEFeb 19 2025
R-4.4-winNOTEFeb 17 2025
R-4.4-macWARNINGFeb 17 2025
R-4.3-winNOTEFeb 17 2025
R-4.3-macNOTEFeb 17 2025

Exports:rfamConsensusSecondaryStructurerfamCovarianceModelrfamFamilyAccessionToIDrfamFamilyIDToAccessionrfamFamilySummaryrfamPDBMappingrfamSecondaryStructurePlotrfamSecondaryStructureXMLSVGrfamSeedAlignmentrfamSeedTreerfamSeedTreeImagerfamSequenceRegionsrfamSequenceSearchrfamTextSearchFamilyAccession

Dependencies:askpassBiocGenericsBiostringsclicrayoncurldata.tablefansigenericsGenomeInfoDbGenomeInfoDbDatagluehttrIRangesjsonlitelifecyclemagickmagrittrmimeopensslpillarpkgconfigR6RcpprlangrsvgrvestS4VectorsselectrstringistringrsystibbleUCSC.utilsutf8vctrsxml2XVector

rfaRm

Rendered fromrfaRm.Rmdusingknitr::rmarkdownon Feb 17 2025.

Last update: 2020-04-08
Started: 2020-04-08