Package: rfaRm 1.25.2

Lara Selles Vidal

rfaRm: An R interface to the Rfam database

rfaRm provides a client interface to the Rfam database of RNA families. Data that can be retrieved include RNA families, secondary structure images, covariance models, sequences within each family, alignments leading to the identification of a family and secondary structures in the dot-bracket format.

Authors:Lara Selles Vidal, Rafael Ayala, Guy-Bart Stan, Rodrigo Ledesma-Amaro

rfaRm_1.25.2.tar.gz
rfaRm_1.25.2.zip(r-4.7-any)rfaRm_1.25.2.zip(r-4.6-any)rfaRm_1.25.2.zip(r-4.5-any)
rfaRm_1.25.2.tgz(r-4.6-any)rfaRm_1.25.2.tgz(r-4.5-any)
rfaRm_1.25.2.tar.gz(r-4.7-any)rfaRm_1.25.2.tar.gz(r-4.6-any)
rfaRm_1.25.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rfaRm/json (API)

# Install 'rfaRm' in R:
install.packages('rfaRm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:rfaRm-1.25.2(bioc 3.24)rfaRm-1.24.1(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

functionalgenomicsdataimportthirdpartyclientvisualizationmultiplesequencealignment

2.60 score 7 scripts 492 downloads 1 mentions 14 exports 35 dependencies

Last updated from:dcde1210c9. Checks:9 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR187
linux-develERROR302
source / vignettesERROR228
linux-releaseERROR276
macos-releaseERROR184
macos-oldrelERROR162
windows-develERROR156
windows-releaseERROR144
windows-oldrelERROR167
wasm-releaseOK131

Exports:rfamConsensusSecondaryStructurerfamCovarianceModelrfamFamilyAccessionToIDrfamFamilyIDToAccessionrfamFamilySummaryrfamPDBMappingrfamSecondaryStructurePlotrfamSecondaryStructureXMLSVGrfamSeedAlignmentrfamSeedTreerfamSeedTreeImagerfamSequenceRegionsrfamSequenceSearchrfamTextSearchFamilyAccession

Dependencies:askpassBiocGenericsBiostringsclicrayoncurldata.tablegenericsgluehttrIRangesjsonlitelifecyclemagickmagrittrmimeMultipleAlignmentopensslpillarpkgconfigR6RcpprlangrsvgrvestS4VectorsselectrSeqinfostringisystibbleutf8vctrsxml2XVector