Package: reconsi 1.17.0
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Stijn Hawinkel
reconsi: Resampling Collapsed Null Distributions for Simultaneous Inference
Improves simultaneous inference under dependence of tests by estimating a collapsed null distribution through resampling. Accounting for the dependence between tests increases the power while reducing the variability of the false discovery proportion. This dependence is common in genomics applications, e.g. when combining flow cytometry measurements with microbiome sequence counts.
Authors:
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NEWS
# Install 'reconsi' in R: |
install.packages('reconsi', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/centerforstatistics-ugent/reconsi/issues
- Vandeputte - Microbiomes of Crohn's disease patients and healthy controls
On BioConductor:reconsi-1.17.0(bioc 3.20)reconsi-1.16.0(bioc 3.19)
Last updated 2 months agofrom:5e0d65c893
Exports:getApproxCovargetC1propplotApproxCovarplotCovarplotNullreconsitestDAA
Dependencies:ade4apeaskpassBiobaseBiocGenericsbiomformatBiostringscliclustercodetoolscolorspacecpp11crayoncurldata.tabledigestfansifarverFNNforeachGenomeInfoDbGenomeInfoDbDataggplot2gluegtablehttrigraphIRangesisobanditeratorsjsonlitekernlabKernSmoothkslabelinglatticelifecyclemagrittrMASSMatrixmatrixStatsmclustmgcvmimemulticoolmulttestmunsellmvtnormnlmeopensslpermutephyloseqpillarpixmappkgconfigplyrpracmaR6RColorBrewerRcppRcppArmadilloreshape2rhdf5rhdf5filtersRhdf5librlangS4VectorsscalesspstringistringrsurvivalsystibbleUCSC.utilsutf8vctrsveganviridisLitewithrXVectorzlibbioc