Package: rebook 1.23.0

Aaron Lun

rebook: Re-using Content in Bioconductor Books

Provides utilities to re-use content across chapters of a Bioconductor book. This is mostly based on functionality developed while writing the OSCA book, but generalized for potential use in other large books with heavy compute. Also contains some functions to assist book deployment.

Authors:Aaron Lun [aut, cre, cph]

rebook_1.23.0.tar.gz
rebook_1.23.0.zip(r-4.7-any)rebook_1.23.0.zip(r-4.6-any)rebook_1.23.0.zip(r-4.5-any)
rebook_1.23.0.tgz(r-4.6-any)rebook_1.23.0.tgz(r-4.5-any)
rebook_1.23.0.tar.gz(r-4.7-any)rebook_1.23.0.tar.gz(r-4.6-any)
rebook_1.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rebook/json (API)

# Install 'rebook' in R:

install.packages('rebook', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:rebook-1.23.0(bioc 3.24)rebook-1.22.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

software infrastructure reportwriting

6.17 score 6 packages 408 scripts 485 downloads 25 exports 36 dependencies

Last updated from:3d3686037e. Checks:8 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	261
linux-devel	WARNING	319
source / vignettes	OK	486
linux-release	WARNING	382
macos-release	WARNING	195
macos-oldrel	WARNING	260
windows-devel	WARNING	2163
windows-release	WARNING	2957
windows-oldrel	WARNING	2541
wasm-release	OK	233

Exports:BiocFavicon BiocSticker bookCache bookCacheExpiry buildChapterGraph chapterPreamble collapseEnd collapseStart compileChapter configureBook createMakefile createRedirects deployCustomCSS extractCached extractFromPackage link openingDetails postCompileBook preCompileBook prettySessionInfo rmd2id scrapeDependencies scrapeReferences setupHTML updateDependencies

Dependencies:base64enc BiocGenerics BiocManager BiocStyle bookdown bslib cachem cli CodeDepends codetools digest dir.expiry evaluate fastmap filelock fontawesome fs generics graph highr htmltools jquerylib jsonlite knitr lifecycle memoise mime R6 rappdirs rlang rmarkdown sass tinytex xfun XML yaml

Writing a book with reusable contents

Rendered fromuserguide.Rmdusingknitr::rmarkdown

Last update: 2021-03-14
Started: 2020-05-17

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Get various Bioconductor images	bioc-images BiocFavicon BiocSticker
Get the local book cache	bookCache bookCacheExpiry
Build the chapter dependency graph	buildChapterGraph
Execute chapter preamble code	chapterPreamble
Print the collapse opening and ending	collapseEnd collapseStart
Compile the book	compileBook postCompileBook preCompileBook
Compile a Rmarkdown file	compileChapter
Helper configuration function for books	configureBook
Create a compilation Makefile	createMakefile
Create redirection pages	createRedirects
Deploy a custom CSS	deployCustomCSS
Extract cached objects	extractCached
Extract cached objects from package's Rmarkdown files	extractFromPackage
Create a link to a different book	link
Report opening details about the book	openingDetails
Pretty session info	prettySessionInfo
Get the chapter identifier	rmd2id
Scrape dependencies	scrapeDependencies
Scrape references from a 'bookdown' directory	scrapeReferences
Set up HTML elements	setupHTML
Update the dependencies	updateDependencies