Package: rebook 1.23.0
Aaron Lun
rebook: Re-using Content in Bioconductor Books
Provides utilities to re-use content across chapters of a Bioconductor book. This is mostly based on functionality developed while writing the OSCA book, but generalized for potential use in other large books with heavy compute. Also contains some functions to assist book deployment.
Authors:
rebook_1.23.0.tar.gz
rebook_1.23.0.zip(r-4.7-any)rebook_1.23.0.zip(r-4.6-any)rebook_1.23.0.zip(r-4.5-any)
rebook_1.23.0.tgz(r-4.6-any)rebook_1.23.0.tgz(r-4.5-any)
rebook_1.23.0.tar.gz(r-4.7-any)rebook_1.23.0.tar.gz(r-4.6-any)
rebook_1.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rebook/json (API)
| # Install 'rebook' in R: |
| install.packages('rebook', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:rebook-1.23.0(bioc 3.24)rebook-1.22.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwareinfrastructurereportwriting
Last updated from:3d3686037e. Checks:8 WARNING, 1 ERROR, 1 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 468 | ||
| linux-devel | WARNING | 544 | ||
| source / vignettes | ERROR | 241 | ||
| linux-release | WARNING | 594 | ||
| macos-release | WARNING | 364 | ||
| macos-oldrel | WARNING | 273 | ||
| windows-devel | WARNING | 326 | ||
| windows-release | WARNING | 297 | ||
| windows-oldrel | WARNING | 351 | ||
| wasm-release | OK | 427 |
Exports:BiocFaviconBiocStickerbookCachebookCacheExpirybuildChapterGraphchapterPreamblecollapseEndcollapseStartcompileChapterconfigureBookcreateMakefilecreateRedirectsdeployCustomCSSextractCachedextractFromPackagelinkopeningDetailspostCompileBookpreCompileBookprettySessionInformd2idscrapeDependenciesscrapeReferencessetupHTMLupdateDependencies
Dependencies:base64encBiocGenericsBiocManagerBiocStylebookdownbslibcachemcliCodeDependscodetoolsdigestdir.expiryevaluatefastmapfilelockfontawesomefsgenericsgraphhighrhtmltoolsjquerylibjsonliteknitrlifecyclememoisemimeR6rappdirsrlangrmarkdownsasstinytexxfunXMLyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Get various Bioconductor images | bioc-images BiocFavicon BiocSticker |
| Get the local book cache | bookCache bookCacheExpiry |
| Build the chapter dependency graph | buildChapterGraph |
| Execute chapter preamble code | chapterPreamble |
| Print the collapse opening and ending | collapseEnd collapseStart |
| Compile the book | compileBook postCompileBook preCompileBook |
| Compile a Rmarkdown file | compileChapter |
| Helper configuration function for books | configureBook |
| Create a compilation Makefile | createMakefile |
| Create redirection pages | createRedirects |
| Deploy a custom CSS | deployCustomCSS |
| Extract cached objects | extractCached |
| Extract cached objects from package's Rmarkdown files | extractFromPackage |
| Create a link to a different book | link |
| Report opening details about the book | openingDetails |
| Pretty session info | prettySessionInfo |
| Get the chapter identifier | rmd2id |
| Scrape dependencies | scrapeDependencies |
| Scrape references from a 'bookdown' directory | scrapeReferences |
| Set up HTML elements | setupHTML |
| Update the dependencies | updateDependencies |
