Package: randRotation 1.17.0

Peter Hettegger

randRotation: Random Rotation Methods for High Dimensional Data with Batch Structure

A collection of methods for performing random rotations on high-dimensional, normally distributed data (e.g. microarray or RNA-seq data) with batch structure. The random rotation approach allows exact testing of dependent test statistics with linear models following arbitrary batch effect correction methods.

Authors:Peter Hettegger [aut, cre]

randRotation_1.17.0.tar.gz
randRotation_1.17.0.zip(r-4.5)randRotation_1.17.0.zip(r-4.4)randRotation_1.17.0.zip(r-4.3)
randRotation_1.17.0.tgz(r-4.4-any)randRotation_1.17.0.tgz(r-4.3-any)
randRotation_1.17.0.tar.gz(r-4.5-noble)randRotation_1.17.0.tar.gz(r-4.4-noble)
randRotation_1.17.0.tgz(r-4.4-emscripten)randRotation_1.17.0.tgz(r-4.3-emscripten)
randRotation.pdf |randRotation.html✨
randRotation/json (API)
NEWS

# Install 'randRotation' in R:
install.packages('randRotation', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/phettegger/randrotation/issues

On BioConductor:randRotation-1.17.0(bioc 3.20)randRotation-1.16.0(bioc 3.19)

bioconductor-package

12 exports 0.49 score 2 dependencies

Last updated 2 months agofrom:4dd63c8474

Exports:contrastModelinitBatchRandrotinitRandrotpFdrqqunifrandorthrandpermutrandrotrotateStatshowweightsX_decomp

Dependencies:rbibutilsRdpack

Random Rotation Package Introduction

Peter Hettegger

Rendered fromrandRotationIntro.Rmdusingknitr::rmarkdownon Jun 26 2024.

Last update: 2021-02-09
Started: 2020-01-03

Readme and manuals

Help Manual

Help pageTopics
randRotation: Random Rotation Methods for High Dimensional Data with Batch StructurerandRotation-package randRotation
Create transformed model matrix for contrast rotationcontrastModel
Dimensions of an Objectdim,initBatchRandrot-method dim,initRandrot-method
Dimnames of an Objectdimnames,initBatchRandrot-method dimnames,initRandrot-method
Initialised random rotation batch objectinitBatchRandrot-class
Initialisation of a random rotation ObjectinitBatchRandrot initBatchRandrot,list-method initRandrot initRandrot,list-method
Initialised random rotation classinitRandrot-class initRandrotW-class
Calculate resampling based p-values and FDRspFdr
Quantile-Quantile plot of data sample against uniform theoretical quantilesqqunif
Random orthogonal matrixrandorth
Generate random permutation matrix for n samplesrandpermut
Random rotation of initialised objectrandrot randrot,initBatchRandrot-method randrot,initRandrot-method randrot,initRandrotW-method
Defunct functions in package 'randRotation'df_estimate
Generate data rotations and calculate statistics on itrotateStat
Rotated object containing rotated and non-rotated statisticsrotateStat-class
Show an Objectshow,initBatchRandrot-method show,initRandrot-method show,rotateStat-method
Extract model weightsweights,initBatchRandrot-method weights,initRandrot-method
Decomposition of the design matrix for random rotation generationX_decomp