Installation | Overview | Dataset | Enrichment | Gene Ontology | EnrichmentMap | WikiPathways | Explore | Visualize | Extend | Save
Package: rWikiPathways 1.33.0
Egon Willighagen
rWikiPathways: rWikiPathways - R client library for the WikiPathways API
Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content in multiple data and image formats, including official monthly release files and convenient GMT read/write functions.
Authors:
rWikiPathways_1.33.0.tar.gz
rWikiPathways_1.33.0.zip(r-4.7)rWikiPathways_1.33.0.zip(r-4.6)rWikiPathways_1.33.0.zip(r-4.5)
rWikiPathways_1.33.0.tgz(r-4.6-any)rWikiPathways_1.33.0.tgz(r-4.5-any)
rWikiPathways_1.33.0.tar.gz(r-4.7-any)rWikiPathways_1.33.0.tar.gz(r-4.6-any)
rWikiPathways_1.33.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rWikiPathways/json (API)
| # Install 'rWikiPathways' in R: |
| install.packages('rWikiPathways', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/wikipathways/rwikipathways/issues
On BioConductor:rWikiPathways-1.33.0(bioc 3.24)rWikiPathways-1.32.0(bioc 3.23)
visualizationgraphandnetworkthirdpartyclientnetworkmetabolomicsbioinformaticsdata-accesspathways
Last updated from:beb20df3ef. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 145 | ||
| linux-devel-x86_64 | NOTE | 253 | ||
| source / vignettes | OK | 195 | ||
| linux-release-x86_64 | NOTE | 216 | ||
| macos-release-arm64 | NOTE | 107 | ||
| macos-oldrel-arm64 | NOTE | 123 | ||
| windows-devel | NOTE | 156 | ||
| windows-release | NOTE | 190 | ||
| windows-oldrel | NOTE | 143 | ||
| wasm-release | OK | 135 |
Exports:downloadPathwayArchivefindPathwayIdsByLiteraturefindPathwayIDsByOrcidfindPathwayIdsByTextfindPathwayIdsByXreffindPathwayNamesByLiteraturefindPathwayNamesByOrcidfindPathwayNamesByTextfindPathwayNamesByXreffindPathwaysByLiteraturefindPathwaysByOrcidfindPathwaysByTextfindPathwaysByXreffindPathwayUrlsByLiteraturefindPathwayUrlsByOrcidfindPathwayUrlsByTextfindPathwayUrlsByXrefgetCountsgetCurationStatusgetCurationTagNamesgetCurationTagsgetEveryCurationTaggetOntologyTermIdsgetOntologyTermNamesgetOntologyTermsgetPathwaygetPathwayHistorygetPathwayIdsByCommunitygetPathwayIdsByCurationTaggetPathwayIdsByOntologyTermgetPathwayIdsByParentOntologyTermgetPathwayInfogetPathwayNamesByCommunitygetPathwaysByCommunitygetPathwaysByCurationTaggetPathwaysByOntologyTermgetPathwaysByParentOntologyTermgetPathwayUrlsByCommunitygetRecentChangesgetRecentChangesIdsgetRecentChangesNamesgetXrefListlistCommunitieslistOrganismslistPathwayIdslistPathwayNameslistPathwayslistPathwayUrlsreadGMTreadGMTnamesreadPathwayGMTwikipathwaysAPIwikipathwaysGETwriteGMT
Dependencies:askpassbitbit64bitopsclicliprcpp11crayoncurldata.tabledplyrgenericsgluehmshttrjsonlitelifecyclelubridatemagrittrmimeopensslpillarpkgconfigprettyunitsprogresspurrrR6RCurlreadrrjsonrlangstringistringrsystibbletidyrtidyselecttimechangetzdbutf8vctrsvroomwithrXML
Pathway Analysis
Last update: 2024-09-01
Started: 2018-09-10
Overview
Prerequisites | Getting started | My favorite pathways | Give me more | Wrapping up | References
Last update: 2023-10-12
Started: 2018-03-25
rWikiPathways and RCy3
Prerequisites | Working together | From networks to pathways
Last update: 2023-03-15
Started: 2018-04-16
rWikiPathways and BridgeDbR
Prerequisites | Getting started | Identifier System Names and Codes | How to use BridgeDbR with rWikiPathways | Other tips | References
Last update: 2021-05-13
Started: 2018-03-30
