Package: rTRM 1.43.0
rTRM: Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction Networks
rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.
Authors:
rTRM_1.43.0.tar.gz
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|rTRM.html✨
rTRM/json (API)
NEWS
# Install 'rTRM' in R: |
install.packages('rTRM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ddiez/rtrm/issues
- biogrid_hs - Network dataset of class 'igraph'
- biogrid_mm - Network dataset of class 'igraph'
On BioConductor:rTRM-1.43.0(bioc 3.20)rTRM-1.42.0(bioc 3.19)
Last updated 2 months agofrom:f94a5e670a
Exports:annotateFreqannotateModuleannotateTRMbiogrid_hsbiogrid_mmfindTRMgetAnnotationsgetBiogridDatagetConcentricListgetLargestCompgetMapsgetMatricesgetMotifsFromEntrezgenegetMotifsFromSymbolgetOrthologFromMatrixgetOrthologsgetOrthologsFromBiomartgetSequencesFromGenomegetSimilarityMatrixgetTFclassgetTFclassFromEntrezgenegetTFtermsinitBiomartlayout.arclayout.concentricplotDegreeplotGraphplotTRMplotTRMlegendprocessBiogridremoveVerticeswriteTRMreport
Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapGenomeInfoDbGenomeInfoDbDatagluehttrigraphIRangesjsonliteKEGGRESTlatticelifecyclemagrittrMatrixmemoisemimeopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorssysUCSC.utilsvctrsXVectorzlibbioc
rTRM: an R package for the identification of transcription regulatory modules (TRMs)
Rendered fromIntroduction.Rmd
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on Jun 26 2024.Last update: 2021-06-19
Started: 2021-06-19