Package: rGADEM 2.53.0

Arnaud Droit

rGADEM: de novo motif discovery

rGADEM is an efficient de novo motif discovery tool for large-scale genomic sequence data. It is an open-source R package, which is based on the GADEM software.

Authors:Arnaud Droit, Raphael Gottardo, Gordon Robertson and Leiping Li

rGADEM_2.53.0.tar.gz
rGADEM_2.53.0.zip(r-4.5)rGADEM_2.53.0.zip(r-4.4)rGADEM_2.53.0.zip(r-4.3)
rGADEM_2.53.0.tgz(r-4.4-arm64)rGADEM_2.53.0.tgz(r-4.4-x86_64)rGADEM_2.53.0.tgz(r-4.3-arm64)rGADEM_2.53.0.tgz(r-4.3-x86_64)
rGADEM_2.53.0.tar.gz(r-4.5-noble)rGADEM_2.53.0.tar.gz(r-4.4-noble)
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rGADEM.pdf |rGADEM.html✨
rGADEM/json (API)

Peer review:

On BioConductor:rGADEM-2.53.0(bioc 3.20)rGADEM-2.52.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

10 exports 2.35 score 51 dependencies 8 mentions

Last updated 2 months agofrom:192d08112e

Exports:consensusendPosGADEMgetPWMnMotifsnOccurrencesparametersplotreadPWMfilestartPos

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopsBSgenomecodetoolscpp11crayoncurlDelayedArrayformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangeshttrIRangesjsonlitelambda.rlatticeMatrixMatrixGenericsmatrixStatsmimeopensslR6RCurlrestfulrRhtslibrjsonRsamtoolsrtracklayerS4ArraysS4VectorsseqLogosnowSparseArraySummarizedExperimentsysUCSC.utilsXMLXVectoryamlzlibbioc