Package: rBiopaxParser 2.47.0
rBiopaxParser: Parses BioPax files and represents them in R
Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.
Authors:
rBiopaxParser_2.47.0.tar.gz
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rBiopaxParser_2.47.0.tar.gz(r-4.5-noble)rBiopaxParser_2.47.0.tar.gz(r-4.4-noble)
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rBiopaxParser.pdf |rBiopaxParser.html✨
rBiopaxParser/json (API)
NEWS
# Install 'rBiopaxParser' in R: |
install.packages('rBiopaxParser', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/frankkramer-lab/rbiopaxparser/issues
- biopax - Biopax example data set
- biopaxLevel3Example - Biopax example data set
On BioConductor:rBiopaxParser-2.47.0(bioc 3.21)rBiopaxParser-2.46.0(bioc 3.20)
Last updated 2 months agofrom:dd61169052. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 27 2024 |
R-4.5-win | NOTE | Nov 27 2024 |
R-4.5-linux | NOTE | Nov 27 2024 |
R-4.4-win | NOTE | Nov 27 2024 |
R-4.4-mac | NOTE | Nov 27 2024 |
R-4.3-win | NOTE | Nov 27 2024 |
R-4.3-mac | NOTE | Nov 27 2024 |
Exports:addBiochemicalReactionaddBiopaxInstanceaddBiopaxInstancesaddControladdPathwayaddPathwayComponentsaddPhysicalEntityaddPhysicalEntityParticipantaddPropertiesToBiopaxInstancecalcGraphOverlapCLASS_INHERITANCE_BP2CLASS_INHERITANCE_BP3CLASS_PROPERTIES_BP2CLASS_PROPERTIES_BP3colorGraphNodescombineNodescreateBiopaxDATABASE_BIOPAXdiffGraphsdownloadBiopaxDatagenerateNewUniqueIDgetClassPropertiesgetInstanceClassgetInstancePropertygetNeighborhoodgetReferencedIDsgetReferencingIDsgetSubClassesgetSuperClassesgetXrefAnnotationshasPropertyintersectGraphsisOfClasslayoutRegulatoryGraphlistComplexComponentslistInstanceslistInteractionComponentslistPathwayComponentslistPathwaysmergePathwayspathway2AdjacancyMatrixpathway2Genesetpathway2Graphpathway2RegulatoryGraphplotRegulatoryGraphreadBiopaxremoveInstanceremoveNodesremovePropertiesselectInstancessplitComplextransitiveClosuretransitiveReductionuniteGraphswriteBiopax
Dependencies:data.tableXML