Package: quantro 1.47.0
Stephanie Hicks
quantro: A test for when to use quantile normalization
A data-driven test for the assumptions of quantile normalization using raw data such as objects that inherit eSets (e.g. ExpressionSet, MethylSet). Group level information about each sample (such as Tumor / Normal status) must also be provided because the test assesses if there are global differences in the distributions between the user-defined groups.
Authors:
quantro_1.47.0.tar.gz
quantro_1.47.0.zip(r-4.7)quantro_1.47.0.zip(r-4.6)quantro_1.47.0.zip(r-4.5)
quantro_1.47.0.tgz(r-4.6-any)quantro_1.47.0.tgz(r-4.5-any)
quantro_1.47.0.tar.gz(r-4.7-any)quantro_1.47.0.tar.gz(r-4.6-any)
quantro_1.47.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
quantro/json (API)
NEWS
| # Install 'quantro' in R: |
| install.packages('quantro', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- flowSorted - A subset of FlowSorted.DLPFC.450k data set
On BioConductor:quantro-1.47.0(bioc 3.24)quantro-1.46.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
normalizationpreprocessingmultiplecomparisonmicroarraysequencing
Last updated from:0cd30ba00c. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 253 | ||
| linux-devel-x86_64 | NOTE | 449 | ||
| source / vignettes | OK | 342 | ||
| linux-release-x86_64 | NOTE | 414 | ||
| macos-release-arm64 | NOTE | 352 | ||
| macos-oldrel-arm64 | NOTE | 256 | ||
| windows-devel | NOTE | 397 | ||
| windows-release | NOTE | 416 | ||
| windows-oldrel | NOTE | 393 | ||
| wasm-release | OK | 172 |
Exports:anovamatboxplotmatdensityMSbetweenMSwithinquantroquantroPlotquantroPvalPermquantroStatquantroStatPermsummary
Dependencies:abindannotateAnnotationDbiaskpassbase64beanplotBHBiobaseBiocBaseUtilsBiocGenericsBiocIObiocmakeBiocParallelBiostringsbitbit64bitopsblobbumphuntercachemcigarilloclicliprcodetoolscpp11crayoncurldata.tableDBIDelayedArrayDelayedMatrixStatsdigestdir.expirydoParalleldoRNGdplyrfarverfastmapfilelockforeachformatRfutile.loggerfutile.optionsgenefiltergenericsGenomicAlignmentsGenomicFeaturesGenomicRangesGEOqueryggplot2gluegtableh5mreadHDF5Arrayhmshttrhttr2illuminaioIRangesisobanditeratorsjsonliteKEGGRESTlabelinglambda.rlatticelifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemimeminfimulttestnlmenor1mixopensslpillarpkgconfigplyrpngpreprocessCoreprettyunitsprogresspurrrquadprogR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRCurlreadrrentrezreshaperestfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrngtoolsRsamtoolsRSQLitertracklayerrvestS4ArraysS4VectorsS7scalesscrimeselectrSeqinfosiggenessnowSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithrXMLxml2xtableXVectoryaml
