Package: protGear 1.17.0

Kennedy Mwai

protGear: Protein Micro Array Data Management and Interactive Visualization

A generic three-step pre-processing package for protein microarray data. This package contains different data pre-processing procedures to allow comparison of their performance.These steps are background correction, the coefficient of variation (CV) based filtering, batch correction and normalization.

Authors:Kennedy Mwai [cre, aut], James Mburu [aut], Jacqueline Waeni [ctb]

protGear_1.17.0.tar.gz
protGear_1.17.0.zip(r-4.7)protGear_1.17.0.zip(r-4.6)protGear_1.17.0.zip(r-4.5)
protGear_1.17.0.tgz(r-4.6-any)protGear_1.17.0.tgz(r-4.5-any)
protGear_1.17.0.tar.gz(r-4.7-any)protGear_1.17.0.tar.gz(r-4.6-any)
protGear_1.17.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
protGear/json (API)
NEWS

# Install 'protGear' in R:
install.packages('protGear', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/keniajin/protgear/issues

On BioConductor:protGear-1.17.0(bioc 3.24)protGear-1.16.0(bioc 3.23)

microarrayonechannelpreprocessingbiomedicalinformaticsproteomicsbatcheffectnormalizationbayesianclusteringregressionsystemsbiologyimmunooncologybackground-correctionmicroarray-datanormalisationproteomics-datashinyshinydashboard

4.34 score 1 stars 11 scripts 436 downloads 28 exports 182 dependencies

Last updated from:d855f9b210. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE205
linux-devel-x86_64NOTE314
source / vignettesOK286
linux-release-x86_64NOTE375
macos-release-arm64NOTE220
macos-oldrel-arm64NOTE162
windows-develNOTE229
windows-releaseNOTE227
windows-oldrelNOTE199
wasm-releaseOK171

Exports:array_varsbest_CV_estimationbg_correctbuffer_spotscheck_sampleID_filescreate_dircv_by_sample_estimationcv_estimationextract_bglaunch_protGear_interactivelaunch_selectmatrix_normalisemerge_sampleIDminpositivename_of_filesoutput_trend_statsplot_bgplot_bufferplot_FBplot_normalisedplot_normalised_antigenread_array_filesread_array_visualizerlm_normaliserlm_normalise_matrixtag_subtractvisualize_slidevisualize_slide_2d

Dependencies:abindaffyaffyioannotateAnnotationDbiaskpassbackportsbase64encBiobaseBiocGenericsBiocManagerBiostringsbitbit64blobbootbroombslibcachemcarcarDataclicliprclustercolorspacecommonmarkcorrplotcowplotcpp11crayoncrosstalkcurldata.tableDBIdendextendDerivdigestdoBydplyrDTellipseemmeansestimabilityevaluatefactoextraFactoMineRfarverfastmapflashClustflexdashboardfontawesomeforcatsforecastFormulafracdifffsgenefiltergenericsGGallyggplot2ggpubrggrepelggsciggsignifggstatsgluegridExtragtablegtoolshighrhmshtmltoolshtmlwidgetshttpuvhttrIRangesisobandjquerylibjsonliteKEGGRESTKendallknitrlabelinglaterlatticelazyevalleapslifecyclelimmalme4lmtestmagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmultcompViewmvtnormnlmenloptrnnetnumDerivopensslotelpatchworkpbkrtestpheatmappillarpkgconfigplotlyplyrpngpolynompreprocessCoreprettyunitsprogresspromisespurrrquantregR.cacheR.methodsS3R.ooR.utilsR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreadrreformulasremotesrlangrmarkdownrprojrootRSQLiterstatixS4VectorsS7sassscalesscatterplot3dSeqinfoshinyshinydashboardsourcetoolsSparseMstatmodstringistringrstylersurvivalsystibbletidyrtidyselecttimeDatetinytextzdburcautf8vctrsviridisviridisLitevroomvsnwithrxfunXMLxtableXVectoryamlzoo

protGear vignette processing suite

Kennedy Mwai

Rendered fromvignette.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2022-12-11
Started: 2021-07-01