Package: protGear 1.9.0
Kennedy Mwai
protGear: Protein Micro Array Data Management and Interactive Visualization
A generic three-step pre-processing package for protein microarray data. This package contains different data pre-processing procedures to allow comparison of their performance.These steps are background correction, the coefficient of variation (CV) based filtering, batch correction and normalization.
Authors:
protGear_1.9.0.tar.gz
protGear_1.9.0.zip(r-4.5)protGear_1.9.0.zip(r-4.4)protGear_1.9.0.zip(r-4.3)
protGear_1.9.0.tgz(r-4.4-any)protGear_1.9.0.tgz(r-4.3-any)
protGear_1.9.0.tar.gz(r-4.5-noble)protGear_1.9.0.tar.gz(r-4.4-noble)
protGear_1.9.0.tgz(r-4.4-emscripten)protGear_1.9.0.tgz(r-4.3-emscripten)
protGear.pdf |protGear.html✨
protGear/json (API)
NEWS
| # Install 'protGear' in R: |
| install.packages('protGear', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/keniajin/protgear/issues
On BioConductor:protGear-1.9.0(bioc 3.20)protGear-1.8.0(bioc 3.19)
Last updated 2 months agofrom:05ea7bc201
Exports:array_varsbest_CV_estimationbg_correctbuffer_spotscheck_sampleID_filescreate_dircv_by_sample_estimationcv_estimationextract_bglaunch_protGear_interactivelaunch_selectmatrix_normalisemerge_sampleIDminpositivename_of_filesoutput_trend_statsplot_bgplot_bufferplot_FBplot_normalisedplot_normalised_antigenread_array_filesread_array_visualizerlm_normaliserlm_normalise_matrixtag_subtractvisualize_slidevisualize_slide_2d
Dependencies:abindaffyaffyioannotateAnnotationDbiaskpassbackportsbase64encBiobaseBiocGenericsBiocManagerBiostringsbitbit64blobbootbroombroom.helpersbslibcachemcarcarDataclicliprclustercolorspacecommonmarkcorrplotcowplotcpp11crayoncrosstalkcurldata.tableDBIdendextendDerivdigestdoBydplyrDTellipseemmeansestimabilityevaluatefactoextraFactoMineRfansifarverfastmapflashClustflexdashboardfontawesomeforcatsfsgenefiltergenericsGenomeInfoDbGenomeInfoDbDataGGallyggplot2ggpubrggrepelggsciggsignifggstatsgluegridExtragtablegtoolshavenhighrhmshtmltoolshtmlwidgetshttpuvhttrIRangesisobandjquerylibjsonliteKEGGRESTKendallknitrlabelinglabelledlaterlatticelazyevalleapslifecyclelimmalme4magrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmultcompViewmunsellmvtnormnlmenloptrnnetnumDerivopensslpatchworkpbkrtestpheatmappillarpkgconfigplogrplotlyplyrpngpolynompreprocessCoreprettyunitsprogresspromisespurrrquantregR.cacheR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRcppEigenreadrremotesreshape2rlangrmarkdownrprojrootRSQLiterstatixS4Vectorssassscalesscatterplot3dshinyshinydashboardsourcetoolsSparseMstatmodstringistringrstylersurvivalsystibbletidyrtidyselecttinytextzdbUCSC.utilsutf8vctrsviridisviridisLitevroomvsnwithrxfunXMLxtableXVectoryamlzlibbioc
