Package: profileplyr 1.29.3

Introduction | Import signal quantification from deepTools or soGGi | Starting with output from deepTools 'computeMatrix' | Starting with output from soGGi | The profileplyr object | Key components of the object | Subsetting the profileplyr object | Changing sample names | Connecting profileplyr functions using the pipe (%>%) operator | Export/Conversion of profileplyr object for heatmap visualization of ranges | Export to a deepTools matrix | Directly generate a customized EnrichedHeatmap with annotated ranges | Convert to an EnrichedHeatmap matrix | Summarize signal for ggplot or heatmap visualization | Matrix output for heatmaps | Long output for ggplot | profileplyr object output with summarized matrix | Annotating of genomic ranges with clusters, genomic regions, and genes | K-means and hierarchical clustering of the genomic ranges | Output matrix with cluster information to deepTools | Generate group-annotated heatmap in R directly with generateEnrichedHeatmap() | Visualize mean range signal for each cluster with ggplot | Gene annotation of ranges | Annotation of ranges with genes and genomic regions using ChIPseeker | Adding metadata information beyond the grouping column to the EnrichedHeatmap | Annotation of ranges with genes using GREAT | Grouping ranges by range metadata, gene list, or additional GRanges | Switch output grouping columns within existing range metadata | Group by user-supplied GRanges | Group by user-supplied gene list | Gene set list contains a character data | Gene set list with data frames for heatmap annotation (using pipe - %>%) | Combining multiple profileplyr functions for heatmap annotation | Acknowledgements | Session info