Package: proDA 1.19.0
proDA: Differential Abundance Analysis of Label-Free Mass Spectrometry Data
Account for missing values in label-free mass spectrometry data without imputation. The package implements a probabilistic dropout model that ensures that the information from observed and missing values are properly combined. It adds empirical Bayesian priors to increase power to detect differentially abundant proteins.
Authors:
proDA_1.19.0.tar.gz
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proDA_1.19.0.tgz(r-4.4-any)proDA_1.19.0.tgz(r-4.3-any)
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proDA.pdf |proDA.html✨
proDA/json (API)
NEWS
# Install 'proDA' in R: |
install.packages('proDA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/const-ae/proda/issues
On BioConductor:proDA-1.19.0(bioc 3.20)proDA-1.18.0(bioc 3.19)
Last updated 2 months agofrom:82055d023a
Exports:abundancescoefficient_variance_matricescoefficientsconvergencedesigndist_approxfeature_parametersgenerate_synthetic_datahyper_parametersinvprobitmedian_normalizationpd_lmpd_row_f_testpd_row_t_testpredictproDAreference_levelresult_namestest_diff
Dependencies:abindaskpassBiobaseBiocGenericscrayoncurlDelayedArrayextraDistrGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrIRangesjsonlitelatticeMatrixMatrixGenericsmatrixStatsmimeopensslR6RcppS4ArraysS4VectorsSparseArraySummarizedExperimentsysUCSC.utilsXVectorzlibbioc