Package: proBAMr 1.41.0

Xiaojing Wang

proBAMr: Generating SAM file for PSMs in shotgun proteomics data

Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.

Authors:Xiaojing Wang

proBAMr_1.41.0.tar.gz
proBAMr_1.41.0.zip(r-4.5)proBAMr_1.41.0.zip(r-4.4)proBAMr_1.41.0.zip(r-4.3)
proBAMr_1.41.0.tgz(r-4.4-any)proBAMr_1.41.0.tgz(r-4.3-any)
proBAMr_1.41.0.tar.gz(r-4.5-noble)proBAMr_1.41.0.tar.gz(r-4.4-noble)
proBAMr_1.41.0.tgz(r-4.4-emscripten)proBAMr_1.41.0.tgz(r-4.3-emscripten)
proBAMr.pdf |proBAMr.html
proBAMr/json (API)
NEWS

# Install 'proBAMr' in R:
install.packages('proBAMr', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:proBAMr-1.41.0(bioc 3.21)proBAMr-1.40.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologyproteomicsmassspectrometrysoftwarevisualization

3.48 score 1 scripts 211 downloads 1 mentions 2 exports 93 dependencies

Last updated 2 months agofrom:911ce0476a. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 30 2024
R-4.5-winOKNov 30 2024
R-4.5-linuxOKNov 30 2024
R-4.4-winOKNov 30 2024
R-4.4-macOKNov 30 2024
R-4.3-winOKNov 30 2024
R-4.3-macOKNov 30 2024

Exports:PrepareAnnotationGENCODEPSMtab2SAM

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbitbit64bitopsblobcachemclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydigestdplyrfansifastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluehmshttrhttr2IRangesjsonliteKEGGRESTlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigplogrpngprettyunitsprogresspurrrR6rappdirsRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttxdbmakerUCSC.utilsutf8vctrswithrXMLxml2XVectoryamlzlibbioc

Introduction to proBAMr

Rendered fromproBAMr.Rnwusingutils::Sweaveon Nov 30 2024.

Last update: 2015-01-02
Started: 2014-10-03