Package: proBAMr 1.47.0

Xiaojing Wang

proBAMr: Generating SAM file for PSMs in shotgun proteomics data

Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.

Authors:Xiaojing Wang

proBAMr_1.47.0.tar.gz
proBAMr_1.47.0.zip(r-4.7)proBAMr_1.47.0.zip(r-4.6)proBAMr_1.47.0.zip(r-4.5)
proBAMr_1.47.0.tgz(r-4.6-any)proBAMr_1.47.0.tgz(r-4.5-any)
proBAMr_1.47.0.tar.gz(r-4.7-any)proBAMr_1.47.0.tar.gz(r-4.6-any)
proBAMr_1.47.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
proBAMr/json (API)
NEWS

# Install 'proBAMr' in R:
install.packages('proBAMr', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:proBAMr-1.47.0(bioc 3.24)proBAMr-1.46.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologyproteomicsmassspectrometrysoftwarevisualization

3.30 score 1 scripts 360 downloads 1 mentions 2 exports 91 dependencies

Last updated from:96418730f5. Checks:1 ERROR, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR187
linux-devel-x86_64OK420
source / vignettesOK298
linux-release-x86_64OK426
macos-release-arm64OK216
macos-oldrel-arm64OK194
windows-develOK329
windows-releaseOK325
windows-oldrelOK252
wasm-releaseOK164

Exports:PrepareAnnotationGENCODEPSMtab2SAM

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbitbit64bitopsblobcachemcigarilloclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydplyrfastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesgluehmshttrhttr2IRangesjsonliteKEGGRESTlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpngprettyunitsprogresspurrrR6rappdirsRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfosnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttxdbmakerUCSC.utilsutf8vctrswithrXMLxml2XVectoryaml

Introduction to proBAMr

Rendered fromproBAMr.Rnwusingutils::Sweaveon May 30 2026.

Last update: 2015-01-02
Started: 2014-10-03