Package: proBAMr 1.41.0

Xiaojing Wang

proBAMr: Generating SAM file for PSMs in shotgun proteomics data

Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.

Authors:Xiaojing Wang

proBAMr_1.41.0.tar.gz
proBAMr_1.41.0.zip(r-4.5)proBAMr_1.41.0.zip(r-4.4)proBAMr_1.41.0.zip(r-4.3)
proBAMr_1.41.0.tgz(r-4.4-any)proBAMr_1.41.0.tgz(r-4.3-any)
proBAMr_1.41.0.tar.gz(r-4.5-noble)proBAMr_1.41.0.tar.gz(r-4.4-noble)
proBAMr_1.41.0.tgz(r-4.4-emscripten)proBAMr_1.41.0.tgz(r-4.3-emscripten)
proBAMr.pdf |proBAMr.html
proBAMr/json (API)
NEWS

# Install 'proBAMr' in R:
install.packages('proBAMr', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:proBAMr-1.41.0(bioc 3.21)proBAMr-1.40.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologyproteomicsmassspectrometrysoftwarevisualization

3.48 score 1 scripts 194 downloads 1 mentions 2 exports 93 dependencies

Last updated 23 days agofrom:911ce0476a. Checks:OK: 5 WARNING: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winOKOct 31 2024
R-4.5-linuxOKOct 31 2024
R-4.4-winOKOct 31 2024
R-4.4-macWARNINGOct 31 2024
R-4.3-winOKOct 31 2024
R-4.3-macWARNINGOct 31 2024

Exports:PrepareAnnotationGENCODEPSMtab2SAM

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbitbit64bitopsblobcachemclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydigestdplyrfansifastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluehmshttrhttr2IRangesjsonliteKEGGRESTlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigplogrpngprettyunitsprogresspurrrR6rappdirsRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttxdbmakerUCSC.utilsutf8vctrswithrXMLxml2XVectoryamlzlibbioc

Introduction to proBAMr

Rendered fromproBAMr.Rnwusingutils::Sweaveon Oct 31 2024.

Last update: 2015-01-02
Started: 2014-10-03