Package: proBAMr 1.41.0

Xiaojing Wang

proBAMr: Generating SAM file for PSMs in shotgun proteomics data

Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.

Authors:Xiaojing Wang

proBAMr_1.41.0.tar.gz
proBAMr_1.41.0.zip(r-4.5)proBAMr_1.41.0.zip(r-4.4)proBAMr_1.41.0.zip(r-4.3)
proBAMr_1.41.0.tgz(r-4.4-any)proBAMr_1.41.0.tgz(r-4.3-any)
proBAMr_1.41.0.tar.gz(r-4.5-noble)proBAMr_1.41.0.tar.gz(r-4.4-noble)
proBAMr_1.41.0.tgz(r-4.4-emscripten)proBAMr_1.41.0.tgz(r-4.3-emscripten)
proBAMr.pdf |proBAMr.html
proBAMr/json (API)
NEWS

# Install 'proBAMr' in R:
install.packages('proBAMr', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:proBAMr-1.41.0(bioc 3.21)proBAMr-1.40.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologyproteomicsmassspectrometrysoftwarevisualization

3.48 score 1 scripts 213 downloads 1 mentions 2 exports 92 dependencies

Last updated 3 months agofrom:911ce0476a. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 14 2025
R-4.5-winOKJan 14 2025
R-4.5-linuxOKJan 14 2025
R-4.4-winOKJan 14 2025
R-4.4-macOKJan 14 2025
R-4.3-winOKJan 14 2025
R-4.3-macOKJan 14 2025

Exports:PrepareAnnotationGENCODEPSMtab2SAM

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbitbit64bitopsblobcachemclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydigestdplyrfansifastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluehmshttrhttr2IRangesjsonliteKEGGRESTlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigplogrpngprettyunitsprogresspurrrR6rappdirsRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttxdbmakerUCSC.utilsutf8vctrswithrXMLxml2XVectoryaml

Introduction to proBAMr

Rendered fromproBAMr.Rnwusingutils::Sweaveon Jan 14 2025.

Last update: 2015-01-02
Started: 2014-10-03