Package: proBAMr 1.39.0

Xiaojing Wang

proBAMr: Generating SAM file for PSMs in shotgun proteomics data

Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.

Authors:Xiaojing Wang

proBAMr_1.39.0.tar.gz
proBAMr_1.39.0.zip(r-4.5)proBAMr_1.39.0.zip(r-4.4)proBAMr_1.39.0.zip(r-4.3)
proBAMr_1.39.0.tgz(r-4.4-any)proBAMr_1.39.0.tgz(r-4.3-any)
proBAMr_1.39.0.tar.gz(r-4.5-noble)proBAMr_1.39.0.tar.gz(r-4.4-noble)
proBAMr_1.39.0.tgz(r-4.4-emscripten)proBAMr_1.39.0.tgz(r-4.3-emscripten)
proBAMr.pdf |proBAMr.html✨
proBAMr/json (API)
NEWS

# Install 'proBAMr' in R:
install.packages('proBAMr', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:proBAMr-1.39.0(bioc 3.20)proBAMr-1.38.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

2 exports 1.00 score 93 dependencies 1 mentions

Last updated 2 months agofrom:e5b7be39ea

Exports:PrepareAnnotationGENCODEPSMtab2SAM

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbitbit64bitopsblobcachemclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydigestdplyrfansifastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluehmshttrhttr2IRangesjsonliteKEGGRESTlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigplogrpngprettyunitsprogresspurrrR6rappdirsRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttxdbmakerUCSC.utilsutf8vctrswithrXMLxml2XVectoryamlzlibbioc

Introduction to proBAMr

Rendered fromproBAMr.Rnwusingutils::Sweaveon Jun 30 2024.

Last update: 2015-01-02
Started: 2014-10-03