Package: pogos 1.33.0

VJ Carey

pogos: PharmacOGenomics Ontology Support

Provide simple utilities for querying bhklab PharmacoDB, modeling API outputs, and integrating to cell and compound ontologies.

Authors:Vince Carey <[email protected]>

pogos_1.33.0.tar.gz
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pogos_1.33.0.tgz(r-4.6-any)pogos_1.33.0.tgz(r-4.5-any)
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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
pogos/json (API)

# Install 'pogos' in R:
install.packages('pogos', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • CCLE_drts - Compounds_v1: serialization of compounds info from PharmacoDb v1
  • cell_lines_v1 - Compounds_v1: serialization of compounds info from PharmacoDb v1
  • compounds_v1 - Compounds_v1: serialization of compounds info from PharmacoDb v1
  • datasets_v1 - Compounds_v1: serialization of compounds info from PharmacoDb v1
  • tissues_v1 - Compounds_v1: serialization of compounds info from PharmacoDb v1

On BioConductor:pogos-1.33.0(bioc 3.24)pogos-1.32.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

pharmacogenomicspooledscreensimmunooncology

3.08 score 12 scripts 540 downloads 10 exports 123 dependencies

Last updated from:b30e57867e. Checks:2 ERROR, 7 WARNING, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR191
linux-develWARNING428
source / vignettesERROR323
linux-releaseWARNING373
macos-releaseWARNING293
macos-oldrelWARNING274
windows-develWARNING273
windows-releaseWARNING251
windows-oldrelWARNING277
wasm-releaseOK140

Exports:basicDecodercompoundsByCellDRProfSetDRTraceSetgetDrugsiriCCLEplotrxdbQuery_v1topEndpoints_v1traces

Dependencies:abindAnnotationDbiAnnotationHubaskpassbase64encbasiliskBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobbslibcachemclicommonmarkcorocpp11crayoncrosstalkcurlDBIdbplyrDelayedArraydigestdir.expirydplyrDTellmerevaluatefarverfastmapfilelockfontawesomefsgenericsGenomicRangesggplot2gluegraphgtableherehighrhtmltoolshtmlwidgetshttpuvhttrhttr2igraphIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglaterlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeontologyIndexontologyPlotontoProcopensslotelpaintmappillarpkgconfigpngpromisespurrrR.methodsS3R.ooR.utilsR6rappdirsRBGLRColorBrewerRcppRcppTOMLreticulateRgraphvizrjsonrlangrmarkdownrprojrootRSQLiteS4ArraysS4VectorsS7sassscalesSeqinfoshinysourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableXVectoryaml