Introduction | Basic software design for pogos | Data structures for pharmacogenomics | Interrogating PharmacoDb | Some stored reference data | Cell lines | Compounds | Datasets | Coverage of pharmacogenomic compound names by ChEBI | Relationships among cell lines | Working with specific elements | Cell line identifiers | Bridging to Cell Line Ontology | Vocabularies of anatomy | Bridging to ChEBI | Retrieving dose-response data for cell-line/compound intersections
Package: pogos 1.33.0
VJ Carey
pogos: PharmacOGenomics Ontology Support
Provide simple utilities for querying bhklab PharmacoDB, modeling API outputs, and integrating to cell and compound ontologies.
Authors:
pogos_1.33.0.tar.gz
pogos_1.33.0.zip(r-4.7)pogos_1.33.0.zip(r-4.6)pogos_1.33.0.zip(r-4.5)
pogos_1.33.0.tgz(r-4.6-any)pogos_1.33.0.tgz(r-4.5-any)
pogos_1.33.0.tar.gz(r-4.7-any)pogos_1.33.0.tar.gz(r-4.6-any)
pogos_1.33.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
pogos/json (API)
| # Install 'pogos' in R: |
| install.packages('pogos', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- CCLE_drts - Compounds_v1: serialization of compounds info from PharmacoDb v1
- cell_lines_v1 - Compounds_v1: serialization of compounds info from PharmacoDb v1
- compounds_v1 - Compounds_v1: serialization of compounds info from PharmacoDb v1
- datasets_v1 - Compounds_v1: serialization of compounds info from PharmacoDb v1
- tissues_v1 - Compounds_v1: serialization of compounds info from PharmacoDb v1
On BioConductor:pogos-1.33.0(bioc 3.24)pogos-1.32.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
pharmacogenomicspooledscreensimmunooncology
Last updated from:b30e57867e. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 211 | ||
| linux-devel-x86_64 | NOTE | 387 | ||
| source / vignettes | OK | 484 | ||
| linux-release-x86_64 | NOTE | 352 | ||
| macos-release-arm64 | NOTE | 231 | ||
| macos-oldrel-arm64 | NOTE | 170 | ||
| windows-devel | NOTE | 267 | ||
| windows-release | NOTE | 267 | ||
| windows-oldrel | NOTE | 276 | ||
| wasm-release | OK | 195 |
Exports:basicDecodercompoundsByCellDRProfSetDRTraceSetgetDrugsiriCCLEplotrxdbQuery_v1topEndpoints_v1traces
Dependencies:abindAnnotationDbiAnnotationHubaskpassbase64encbasiliskBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobbslibcachemclicommonmarkcorocpp11crayoncrosstalkcurlDBIdbplyrDelayedArraydigestdir.expirydplyrDTellmerevaluatefarverfastmapfilelockfontawesomefsgenericsGenomicRangesggplot2gluegraphgtableherehighrhtmltoolshtmlwidgetshttpuvhttrhttr2igraphIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglaterlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeontologyIndexontologyPlotontoProcopensslotelpaintmappillarpkgconfigpngpromisespurrrR.methodsS3R.ooR.utilsR6rappdirsRBGLRColorBrewerRcppRcppTOMLreticulateRgraphvizrjsonrlangrmarkdownrprojrootRSQLiteS4ArraysS4VectorsS7sassscalesSeqinfoshinysourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableXVectoryaml
