Package: pmm 1.45.0

Anna Drewek
pmm: Parallel Mixed Model
The Parallel Mixed Model (PMM) approach is suitable for hit selection and cross-comparison of RNAi screens generated in experiments that are performed in parallel under several conditions. For example, we could think of the measurements or readouts from cells under RNAi knock-down, which are infected with several pathogens or which are grown from different cell lines.
Authors:
pmm_1.45.0.tar.gz
pmm_1.45.0.zip(r-4.7)pmm_1.45.0.zip(r-4.6)pmm_1.45.0.zip(r-4.5)
pmm_1.45.0.tgz(r-4.6-any)pmm_1.45.0.tgz(r-4.5-any)
pmm_1.45.0.tar.gz(r-4.7-any)pmm_1.45.0.tar.gz(r-4.6-any)
pmm_1.45.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
pmm/json (API)
NEWS
| # Install 'pmm' in R: |
| install.packages('pmm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- kinome - Example Data from InfectX
On BioConductor:pmm-1.45.0(bioc 3.24)pmm-1.44.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:c2c84893c6. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 143 | ||
| linux-devel-x86_64 | NOTE | 199 | ||
| source / vignettes | OK | 175 | ||
| linux-release-x86_64 | NOTE | 174 | ||
| macos-release-arm64 | NOTE | 131 | ||
| macos-oldrel-arm64 | NOTE | 105 | ||
| windows-devel | NOTE | 116 | ||
| windows-release | NOTE | 130 | ||
| windows-oldrel | NOTE | 123 | ||
| wasm-release | OK | 94 |
Exports:hitheatmappmmsharedness
Dependencies:bootlatticelme4MASSMatrixminqanlmenloptrrbibutilsRcppRcppEigenRdpackreformulasrlang
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| The PMM-Package | pmm-package |
| Visualization of the PMM results | hitheatmap |
| Example Data from InfectX | kinome |
| Fitting the PMM | pmm |
| Sharedness Score | sharedness |