phosphonormalizer: Compensates for the bias introduced by median normalization in

Package: phosphonormalizer 1.37.0

Sohrab Saraei

phosphonormalizer: Compensates for the bias introduced by median normalization in

It uses the overlap between enriched and non-enriched datasets to compensate for the bias introduced in global phosphorylation after applying median normalization.

Authors:Sohrab Saraei [aut, cre], Tomi Suomi [ctb], Otto Kauko [ctb], Laura Elo [ths]

phosphonormalizer_1.37.0.tar.gz
phosphonormalizer_1.37.0.zip(r-4.7-any)phosphonormalizer_1.37.0.zip(r-4.6-any)phosphonormalizer_1.37.0.zip(r-4.5-any)
phosphonormalizer_1.37.0.tgz(r-4.6-any)phosphonormalizer_1.37.0.tgz(r-4.5-any)
phosphonormalizer_1.37.0.tar.gz(r-4.7-any)phosphonormalizer_1.37.0.tar.gz(r-4.6-any)
phosphonormalizer_1.37.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
phosphonormalizer/json (API)

# Install 'phosphonormalizer' in R:

install.packages('phosphonormalizer', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

enriched.rd - Enriched dataset
non.enriched.rd - Non-enriched dataset

On BioConductor:phosphonormalizer-1.37.0(bioc 3.24)phosphonormalizer-1.36.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

software statisticalmethod workflowstep normalization proteomics

3.60 score 4 scripts 454 downloads 1 exports 3 dependencies

Last updated from:045a448b3a. Checks:1 WARNING, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	195
linux-devel	OK	205
source / vignettes	OK	249
linux-release	OK	228
macos-release	OK	104
macos-oldrel	OK	125
windows-devel	OK	161
windows-release	OK	94
windows-oldrel	OK	101
wasm-release	OK	125