phosphonormalizer: Compensates for the bias introduced by median normalization in

Package: phosphonormalizer 1.37.0

Sohrab Saraei

phosphonormalizer: Compensates for the bias introduced by median normalization in

It uses the overlap between enriched and non-enriched datasets to compensate for the bias introduced in global phosphorylation after applying median normalization.

Authors:Sohrab Saraei [aut, cre], Tomi Suomi [ctb], Otto Kauko [ctb], Laura Elo [ths]

phosphonormalizer_1.37.0.tar.gz
phosphonormalizer_1.37.0.zip(r-4.7)phosphonormalizer_1.37.0.zip(r-4.6)phosphonormalizer_1.37.0.zip(r-4.5)
phosphonormalizer_1.37.0.tgz(r-4.6-any)phosphonormalizer_1.37.0.tgz(r-4.5-any)
phosphonormalizer_1.37.0.tar.gz(r-4.7-any)phosphonormalizer_1.37.0.tar.gz(r-4.6-any)
phosphonormalizer_1.37.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
phosphonormalizer/json (API)

# Install 'phosphonormalizer' in R:

install.packages('phosphonormalizer', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

enriched.rd - Enriched dataset
non.enriched.rd - Non-enriched dataset

On BioConductor:phosphonormalizer-1.37.0(bioc 3.24)phosphonormalizer-1.36.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

software statisticalmethod workflowstep normalization proteomics

3.60 score 4 scripts 384 downloads 1 exports 3 dependencies

Last updated from:045a448b3a. Checks:1 WARNING, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	166
linux-devel-x86_64	OK	229
source / vignettes	OK	226
linux-release-x86_64	OK	200
macos-release-arm64	OK	104
macos-oldrel-arm64	OK	107
windows-devel	OK	117
windows-release	OK	111
windows-oldrel	OK	99
wasm-release	OK	153