Package: phosphonormalizer 1.31.0

Sohrab Saraei

phosphonormalizer: Compensates for the bias introduced by median normalization in

It uses the overlap between enriched and non-enriched datasets to compensate for the bias introduced in global phosphorylation after applying median normalization.

Authors:Sohrab Saraei [aut, cre], Tomi Suomi [ctb], Otto Kauko [ctb], Laura Elo [ths]

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phosphonormalizer.pdf |phosphonormalizer.html✨
phosphonormalizer/json (API)
NEWS

# Install 'phosphonormalizer' in R:

install.packages('phosphonormalizer', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

enriched.rd - Enriched dataset
non.enriched.rd - Non-enriched dataset

On BioConductor:phosphonormalizer-1.31.0(bioc 3.21)phosphonormalizer-1.30.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

software statisticalmethod workflowstep normalization proteomics

3.60 score 2 scripts 152 downloads 1 exports 3 dependencies

Last updated 2 months agofrom:b1d7f27341. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Dec 18 2024
R-4.5-win	OK	Dec 18 2024
R-4.5-linux	OK	Dec 18 2024
R-4.4-win	OK	Dec 18 2024
R-4.4-mac	OK	Dec 18 2024
R-4.3-win	OK	Dec 18 2024
R-4.3-mac	OK	Dec 18 2024