Package: phosphonormalizer 1.31.0

Sohrab Saraei

phosphonormalizer: Compensates for the bias introduced by median normalization in

It uses the overlap between enriched and non-enriched datasets to compensate for the bias introduced in global phosphorylation after applying median normalization.

Authors:Sohrab Saraei [aut, cre], Tomi Suomi [ctb], Otto Kauko [ctb], Laura Elo [ths]

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phosphonormalizer.pdf |phosphonormalizer.html
phosphonormalizer/json (API)
NEWS

# Install 'phosphonormalizer' in R:
install.packages('phosphonormalizer', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:phosphonormalizer-1.31.0(bioc 3.21)phosphonormalizer-1.30.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwarestatisticalmethodworkflowstepnormalizationproteomics

3.60 score 2 scripts 152 downloads 1 exports 3 dependencies

Last updated 3 months agofrom:b1d7f27341. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 17 2025
R-4.5-winOKJan 17 2025
R-4.5-linuxOKJan 17 2025
R-4.4-winOKJan 17 2025
R-4.4-macOKJan 17 2025
R-4.3-winOKJan 17 2025
R-4.3-macOKJan 17 2025

Exports:normalizePhospho

Dependencies:matrixStatsplyrRcpp

phosphonormalizer: Pairwise normalization of phosphoproteomics data

Rendered fromvignette.Rmdusingknitr::rmarkdownon Jan 17 2025.

Last update: 2018-08-30
Started: 2016-11-28

phosphonormalizer: Phosphoproteomics Normalization

Rendered fromphosphonormalizer.Rnwusingutils::Sweaveon Jan 17 2025.

Last update: 2018-08-30
Started: 2016-11-28