Package: phantasusLite 1.3.0

Alexey Sergushichev

phantasusLite: Loading and annotation RNA-seq counts matrices

PhantasusLite – a lightweight package with helper functions of general interest extracted from phantasus package. In parituclar it simplifies working with public RNA-seq datasets from GEO by providing access to the remote HSDS repository with the precomputed gene counts from ARCHS4 and DEE2 projects.

Authors:Rita Sablina [aut], Maxim Kleverov [aut], Alexey Sergushichev [aut, cre]

phantasusLite_1.3.0.tar.gz
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phantasusLite_1.3.0.tgz(r-4.4-any)phantasusLite_1.3.0.tgz(r-4.3-any)
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phantasusLite.pdf |phantasusLite.html✨
phantasusLite/json (API)
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Bug tracker:https://github.com/ctlab/phantasuslite/issues

On BioConductor:phantasusLite-1.3.0(bioc 3.20)phantasusLite-1.2.0(bioc 3.19)

bioconductor-package

6 exports 1.38 score 34 dependencies 1 dependents

Last updated 2 months agofrom:236c8d2b76

Exports:getHSDSFileListinferConditionloadCountsFromH5FileHSDSloadCountsFromHSDSreadGctwriteGct

Dependencies:abindaskpassBiobaseBiocGenericsclicrayoncurldata.tableDelayedArraygluehttrIRangesjsonlitelatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslR6rhdf5clientrjsonrlangS4ArraysS4VectorsSparseArraystringistringrsysvctrsXVectorzlibbioc