Package: phantasus 1.33.0

Alexey Sergushichev

phantasus: Visual and interactive gene expression analysis

Phantasus is a web-application for visual and interactive gene expression analysis. Phantasus is based on Morpheus – a web-based software for heatmap visualisation and analysis, which was integrated with an R environment via OpenCPU API. Aside from basic visualization and filtering methods, R-based methods such as k-means clustering, principal component analysis or differential expression analysis with limma package are supported.

Authors:Maxim Kleverov [aut], Daria Zenkova [aut], Vladislav Kamenev [aut], Margarita Sablina [ctb], Maxim Artyomov [aut], Alexey Sergushichev [aut, cre]

phantasus_1.33.0.tar.gz
phantasus_1.33.0.zip(r-4.7)phantasus_1.33.0.zip(r-4.6)phantasus_1.33.0.zip(r-4.5)
phantasus_1.33.0.tgz(r-4.6-any)phantasus_1.33.0.tgz(r-4.5-any)
phantasus_1.33.0.tar.gz(r-4.7-any)phantasus_1.33.0.tar.gz(r-4.6-any)
phantasus_1.33.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
phantasus/json (API)
NEWS

# Install 'phantasus' in R:
install.packages('phantasus', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ctlab/phantasus/issues

Datasets:
  • es - Example dataset
  • fgseaExample - Example pathway data.frame for fgsea tool

On BioConductor:phantasus-1.33.0(bioc 3.24)phantasus-1.32.0(bioc 3.23)

geneexpressionguivisualizationdatarepresentationtranscriptomicsrnaseqmicroarraynormalizationclusteringdifferentialexpressionprincipalcomponentimmunooncology

7.35 score 46 stars 18 scripts 457 downloads 10 exports 151 dependencies

Last updated from:4c0f309a59. Checks:4 ERROR, 4 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR252
linux-devel-x86_64NOTE563
source / vignettesOK330
linux-release-x86_64NOTE479
macos-release-arm64NOTE259
macos-oldrel-arm64NOTE256
windows-develERROR401
windows-releaseERROR379
windows-oldrelERROR402
wasm-releaseOK238

Exports:generatePreloadedSessiongetESgetGDSgetGSEgetPhantasusConfread.gctreparseCachedESsservePhantasussetupPhantasuswrite.gct

Dependencies:abindAnnotationDbiapeglmaskpassassertthatbase64encbbmlebdsmatrixBHBiobaseBiocGenericsbiocmakeBiocParallelBiostringsbitbit64blobbrewcachemccaPPclicliprcodacodetoolsconfigcowplotcpp11crayoncurldata.tableDBIDelayedArrayDEoptimRDESeq2digestdir.expirydplyredgeRemdbookevaluatefarverfastmapfastmatchfgseafilelockformatRfsfutile.loggerfutile.optionsgenericsGenomicRangesGEOqueryggplot2gluegtablehighrhmshtmltoolshttpuvhttrhttr2IRangesisobandjsonliteKEGGRESTknitrlabelinglambda.rlaterlatticelifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimemvtnormnumDerivopencpuopensslotelpcaPPphantasusLitepheatmappillarpkgconfigplyrpngprettyunitsprogresspromisesprotolitepurrrR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenRcppNumericalreadrremotesrentrezrhdf5rhdf5clientrhdf5filtersRhdf5librjsonrlangrobustbaseRSQLitervestS4ArraysS4VectorsS7scalesselectrSeqinfosnowSparseArraystatmodstringistringrSummarizedExperimentsvglitesyssystemfontstextshapingtibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwebutilswithrxfunXMLxml2XVectoryamlzip

Using Phantasus application

Rendered fromphantasus-tutorial.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-02-11
Started: 2017-07-26