Package: pgxRpi 1.1.4

Hangjia Zhao

pgxRpi: R wrapper for Progenetix

The package is an R wrapper for Progenetix REST API built upon the Beacon v2 protocol. Its purpose is to provide a seamless way for retrieving genomic data from Progenetix database—an open resource dedicated to curated oncogenomic profiles. Empowered by this package, users can effortlessly access and visualize data from Progenetix.

Authors:Hangjia Zhao [aut, cre], Michael Baudis [aut]

pgxRpi_1.1.4.tar.gz
pgxRpi_1.1.4.zip(r-4.5)pgxRpi_1.1.4.zip(r-4.4)pgxRpi_1.1.4.zip(r-4.3)
pgxRpi_1.1.4.tgz(r-4.4-any)pgxRpi_1.1.4.tgz(r-4.3-any)
pgxRpi_1.1.4.tar.gz(r-4.5-noble)pgxRpi_1.1.4.tar.gz(r-4.4-noble)
pgxRpi_1.1.4.tgz(r-4.4-emscripten)pgxRpi_1.1.4.tgz(r-4.3-emscripten)
pgxRpi.pdf |pgxRpi.html✨
pgxRpi/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/progenetix/pgxrpi/issues

On BioConductor:pgxRpi-1.1.3(bioc 3.20)pgxRpi-1.0.2(bioc 3.19)

bioconductor-package

7 exports 1.51 score 117 dependencies

Last updated 16 days agofrom:8dbc10f307

Exports:pgxCountpgxFilterpgxFreqplotpgxLoaderpgxMetaplotpgxSegprocesssegtoFreq

Dependencies:abindaskpassattemptbackportsBiobaseBiocGenericsbootbroomcarcarDatacirclizeclicolorspacecommonmarkcorrplotcowplotcpp11crayoncurldata.tableDelayedArraydplyrevaluateexactRankTestsfansifarvergenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2ggpubrggrepelggsciggsignifggtextGlobalOptionsgluegridExtragridtextgtablehighrhttrIRangesisobandjpegjsonlitekm.ciKMsurvknitrlabelinglatticelifecyclelme4lubridatemagrittrmarkdownMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmaxstatmgcvmimeminqamunsellmvtnormnlmenloptrnnetnumDerivopensslparallellypbkrtestpillarpkgconfigplyrpngpolynompurrrquantregR6RColorBrewerRcppRcppEigenrlangrstatixS4ArraysS4VectorsscalesshapeSparseArraySparseMstringistringrSummarizedExperimentsurvivalsurvminersurvMiscsystibbletidyrtidyselecttimechangeUCSC.utilsutf8vctrsviridisLitewithrxfunxml2xtableXVectoryamlzlibbioczoo