Package: pepXMLTab 1.41.0
Xiaojing Wang
pepXMLTab: Parsing pepXML files and filter based on peptide FDR.
Parsing pepXML files based one XML package. The package tries to handle pepXML files generated from different softwares. The output will be a peptide-spectrum-matching tabular file. The package also provide function to filter the PSMs based on FDR.
Authors:
pepXMLTab_1.41.0.tar.gz
pepXMLTab_1.41.0.zip(r-4.5)pepXMLTab_1.41.0.zip(r-4.4)pepXMLTab_1.41.0.zip(r-4.3)
pepXMLTab_1.41.0.tgz(r-4.4-any)pepXMLTab_1.41.0.tgz(r-4.3-any)
pepXMLTab_1.41.0.tar.gz(r-4.5-noble)pepXMLTab_1.41.0.tar.gz(r-4.4-noble)
pepXMLTab_1.41.0.tgz(r-4.4-emscripten)pepXMLTab_1.41.0.tgz(r-4.3-emscripten)
pepXMLTab.pdf |pepXMLTab.html✨
pepXMLTab/json (API)
NEWS
# Install 'pepXMLTab' in R: |
install.packages('pepXMLTab', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:pepXMLTab-1.41.0(bioc 3.21)pepXMLTab-1.40.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologyproteomicsmassspectrometry
Last updated 2 months agofrom:6c9f5e25ee. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 29 2024 |
R-4.5-win | NOTE | Nov 29 2024 |
R-4.5-linux | NOTE | Nov 29 2024 |
R-4.4-win | NOTE | Nov 29 2024 |
R-4.4-mac | NOTE | Nov 29 2024 |
R-4.3-win | NOTE | Nov 29 2024 |
R-4.3-mac | NOTE | Nov 29 2024 |
Exports:pepXML2tabPSMfilter
Dependencies:XML
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Generate a data frame objects from a pepXML file. | pepXML2tab |
Filter the peptide indentification. | PSMfilter |