Package: pathifier 1.51.0

Assif Yitzhaky

pathifier: Quantify deregulation of pathways in cancer

Pathifier is an algorithm that infers pathway deregulation scores for each tumor sample on the basis of expression data. This score is determined, in a context-specific manner, for every particular dataset and type of cancer that is being investigated. The algorithm transforms gene-level information into pathway-level information, generating a compact and biologically relevant representation of each sample.

Authors:Yotam Drier

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manual.pdf |manual.html✨
card.svg |card.png
pathifier/json (API)

# Install 'pathifier' in R:
install.packages('pathifier', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:pathifier-1.51.0(bioc 3.24)pathifier-1.50.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

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5.11 score 1 packages 31 scripts 375 downloads 7 mentions 1 exports 4 dependencies

Last updated from:03b4b53ee2. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR138
linux-devel-x86_64NOTE185
source / vignettesOK182
linux-release-x86_64NOTE148
macos-release-arm64NOTE104
macos-oldrel-arm64NOTE120
windows-develNOTE85
windows-releaseNOTE87
windows-oldrelNOTE93
wasm-releaseOK96

Exports:quantify_pathways_deregulation

Dependencies:princurveR.methodsS3R.ooRcpp

Quantify deregulation of pathways in cancer

Rendered fromOverview.Rnwusingutils::Sweaveon Jun 10 2026.

Last update: 2013-11-01
Started: 2013-11-01