Package: pathifier 1.45.0

Assif Yitzhaky

pathifier: Quantify deregulation of pathways in cancer

Pathifier is an algorithm that infers pathway deregulation scores for each tumor sample on the basis of expression data. This score is determined, in a context-specific manner, for every particular dataset and type of cancer that is being investigated. The algorithm transforms gene-level information into pathway-level information, generating a compact and biologically relevant representation of each sample.

Authors:Yotam Drier

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pathifier/json (API)

# Install 'pathifier' in R:
install.packages('pathifier', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:pathifier-1.45.0(bioc 3.21)pathifier-1.44.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

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5.07 score 1 packages 28 scripts 257 downloads 7 mentions 1 exports 4 dependencies

Last updated 5 months agofrom:b29897578b. Checks:1 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 28 2025
R-4.5-winNOTEFeb 28 2025
R-4.5-macNOTEFeb 28 2025
R-4.5-linuxNOTEFeb 28 2025
R-4.4-winNOTEFeb 28 2025
R-4.4-macNOTEFeb 28 2025
R-4.3-winNOTEFeb 28 2025
R-4.3-macNOTEFeb 28 2025

Exports:quantify_pathways_deregulation

Dependencies:princurveR.methodsS3R.ooRcpp

Quantify deregulation of pathways in cancer

Rendered fromOverview.Rnwusingutils::Sweaveon Feb 28 2025.

Last update: 2013-11-01
Started: 2013-11-01