Package: pathRender 1.73.0
Vince Carey
pathRender: Render molecular pathways
build graphs from pathway databases, render them by Rgraphviz.
Authors:
pathRender_1.73.0.tar.gz
pathRender_1.73.0.zip(r-4.5)pathRender_1.73.0.zip(r-4.4)pathRender_1.73.0.zip(r-4.3)
pathRender_1.73.0.tgz(r-4.4-any)pathRender_1.73.0.tgz(r-4.3-any)
pathRender_1.73.0.tar.gz(r-4.5-noble)pathRender_1.73.0.tar.gz(r-4.4-noble)
pathRender_1.73.0.tgz(r-4.4-emscripten)pathRender_1.73.0.tgz(r-4.3-emscripten)
pathRender.pdf |pathRender.html✨
pathRender/json (API)
NEWS
| # Install 'pathRender' in R: |
| install.packages('pathRender', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:pathRender-1.73.0(bioc 3.20)pathRender-1.72.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:420cb5cee9
Exports:colorNodesgraphcMAPplotplotExGraphpwayRendAttrsreduceESrendercMAPPathway
Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicMAPcpp11crayoncurlDBIfastmapGenomeInfoDbGenomeInfoDbDatagluegraphhttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslpkgconfigplogrpngR6RColorBrewerRgraphvizrlangRSQLiteS4VectorssysUCSC.utilsvctrsXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Class "coloredGraph" | coloredGraph-class plot,coloredGraph,ANY-method pwayRendAttrs |
| attach node coloring information to a graphNEL instance | colorNodes colorNodes,graphNEL,numeric,character,function-method |
| obtain a graph object corresponding to a cMAP pathway | graphcMAP |
| plot a gene network, coloring nodes according to relative expression values | plotExGraph |
| Class "pwayGraph" - extension to graphNEL for pathway rendering | plot,pwayGraph,ANY-method pwayGraph-class |
| collapse the assay values in an ExpressionSet to a set of specified genes, using a statistic when multiple probes map to a given gene | reduceES |
| Render pathways from cMAP | rendercMAPPathway |
