Package: panp 1.77.0

Peter Warren

panp: Presence-Absence Calls from Negative Strand Matching Probesets

A function to make gene presence/absence calls based on distance from negative strand matching probesets (NSMP) which are derived from Affymetrix annotation. PANP is applied after gene expression values are created, and therefore can be used after any preprocessing method such as MAS5 or GCRMA, or PM-only methods like RMA. NSMP sets have been established for the HGU133A and HGU133-Plus-2.0 chipsets to date.

Authors:Peter Warren

panp_1.77.0.tar.gz
panp_1.77.0.zip(r-4.5)panp_1.77.0.zip(r-4.4)panp_1.77.0.zip(r-4.3)
panp_1.77.0.tgz(r-4.5-any)panp_1.77.0.tgz(r-4.4-any)panp_1.77.0.tgz(r-4.3-any)
panp_1.77.0.tar.gz(r-4.5-noble)panp_1.77.0.tar.gz(r-4.4-noble)
panp_1.77.0.tgz(r-4.4-emscripten)panp_1.77.0.tgz(r-4.3-emscripten)
panp.pdf |panp.html✨
panp/json (API)

# Install 'panp' in R:
install.packages('panp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:panp-1.77.0(bioc 3.21)panp-1.76.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

infrastructure

3.78 score 2 scripts 414 downloads 3 mentions 1 exports 7 dependencies

Last updated 5 months agofrom:6b89b210ea. Checks:1 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 29 2025
R-4.5-winNOTEMar 29 2025
R-4.5-macNOTEMar 29 2025
R-4.5-linuxNOTEMar 29 2025
R-4.4-winNOTEMar 29 2025
R-4.4-macNOTEMar 29 2025
R-4.4-linuxNOTEMar 29 2025
R-4.3-winNOTEMar 29 2025
R-4.3-macNOTEMar 29 2025

Exports:pa.calls

Dependencies:affyaffyioBiobaseBiocGenericsBiocManagergenericspreprocessCore

gene presence/absence calls

Rendered frompanp.Rnwusingutils::Sweaveon Mar 29 2025.

Last update: 2013-11-01
Started: 2013-11-01