Package: panp 1.77.0

Peter Warren

panp: Presence-Absence Calls from Negative Strand Matching Probesets

A function to make gene presence/absence calls based on distance from negative strand matching probesets (NSMP) which are derived from Affymetrix annotation. PANP is applied after gene expression values are created, and therefore can be used after any preprocessing method such as MAS5 or GCRMA, or PM-only methods like RMA. NSMP sets have been established for the HGU133A and HGU133-Plus-2.0 chipsets to date.

Authors:Peter Warren

panp_1.77.0.tar.gz
panp_1.77.0.zip(r-4.5)panp_1.77.0.zip(r-4.4)panp_1.77.0.zip(r-4.3)
panp_1.77.0.tgz(r-4.4-any)panp_1.77.0.tgz(r-4.3-any)
panp_1.77.0.tar.gz(r-4.5-noble)panp_1.77.0.tar.gz(r-4.4-noble)
panp_1.77.0.tgz(r-4.4-emscripten)panp_1.77.0.tgz(r-4.3-emscripten)
panp.pdf |panp.html✨
panp/json (API)

# Install 'panp' in R:
install.packages('panp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:panp-1.77.0(bioc 3.21)panp-1.76.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

infrastructure

3.78 score 2 scripts 342 downloads 3 mentions 1 exports 8 dependencies

Last updated 3 months agofrom:6b89b210ea. Checks:1 OK, 6 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKDec 29 2024
R-4.5-winNOTEDec 31 2024
R-4.5-linuxNOTEDec 29 2024
R-4.4-winNOTEDec 31 2024
R-4.4-macNOTEDec 29 2024
R-4.3-winNOTENov 29 2024
R-4.3-macNOTEDec 29 2024

Exports:pa.calls

Dependencies:affyaffyioBiobaseBiocGenericsBiocManagergenericspreprocessCorezlibbioc

gene presence/absence calls

Rendered frompanp.Rnwusingutils::Sweaveon Dec 29 2024.

Last update: 2013-11-01
Started: 2013-11-01