Package: pRolocGUI 2.23.0

Lisa Breckels

pRolocGUI: Interactive visualisation of spatial proteomics data

The package pRolocGUI comprises functions to interactively visualise spatial proteomics data on the basis of pRoloc, pRolocdata and shiny.

Authors:Lisa Breckels [aut, cre], Thomas Naake [aut], Laurent Gatto [aut]

pRolocGUI_2.23.0.tar.gz
pRolocGUI_2.23.0.zip(r-4.7)pRolocGUI_2.23.0.zip(r-4.6)pRolocGUI_2.23.0.zip(r-4.5)
pRolocGUI_2.23.0.tgz(r-4.6-any)pRolocGUI_2.23.0.tgz(r-4.5-any)
pRolocGUI_2.23.0.tar.gz(r-4.7-any)pRolocGUI_2.23.0.tar.gz(r-4.6-any)
pRolocGUI_2.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
pRolocGUI/json (API)

# Install 'pRolocGUI' in R:

install.packages('pRolocGUI', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lgatto/prolocgui/issues

On BioConductor:pRolocGUI-2.23.0(bioc 3.24)pRolocGUI-2.22.0(bioc 3.23)

proteomics visualization gui

6.78 score 8 stars 3 scripts 5 mentions 1 exports 233 dependencies

Last updated from:3a63f71243. Checks:1 WARNING, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	252
linux-devel-x86_64	OK	575
source / vignettes	OK	397
linux-release-x86_64	OK	578
macos-release-arm64	OK	359
macos-oldrel-arm64	OK	359
windows-devel	OK	480
windows-release	OK	473
windows-oldrel	OK	493
wasm-release	OK	244

Exports:pRolocVis

Dependencies:abind affy affyio annotate AnnotationDbi AnnotationFilter askpass assertthat base64enc BH Biobase BiocBaseUtils BiocFileCache BiocGenerics biocmake BiocManager BiocParallel biomaRt Biostrings bit bit64 blob bslib cachem caret class cli clock clue cluster coda codetools colorspace colourpicker commonmark cpp11 crayon crosstalk curl data.table DBI dbplyr DelayedArray dendextend DEoptimR diagram digest diptest dir.expiry doParallel dplyr DT e1071 evaluate farver fastmap filelock flexmix FNN fontawesome foreach formatR fpc fresh fs futile.logger futile.options future future.apply gbm gdata genefilter generics GenomicRanges ggplot2 ggvis globals glue gower gridExtra gtable gtools hardhat hexbin highr hms htmltools htmlwidgets httpuv httr httr2 hwriter igraph impute ipred IRanges isoband iterators jquerylib jsonlite KEGGREST kernlab KernSmooth knitr labeling lambda.r LaplacesDemon later lattice lava lazyeval lifecycle limma listenv litedown lpSolve lubridate magrittr MALDIquant markdown MASS Matrix MatrixGenerics matrixStats mclust memoise MetaboCoreUtils mime miniUI mixtools mlbench MLInterfaces ModelMetrics modeltools MsCoreUtils MSnbase MultiAssayExperiment mvtnorm mzID mzR ncdf4 nlme nnet numDeriv openssl otel parallelly pcaMethods pillar pkgconfig plotly pls plyr png prabclus preprocessCore prettyunits pROC prodlim progress progressr pRoloc promises ProtGenerics proxy PSMatch PTMods purrr QFeatures R6 randomForest rappdirs RColorBrewer Rcpp RcppArmadillo recipes reshape2 Rhdf5lib rlang rmarkdown robustbase rpart RSQLite rstudioapi S4Arrays S4Vectors S7 sampling sass scales segmented Seqinfo sfsmisc shape shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets snow sourcetools SparseArray sparsevctrs Spectra SQUAREM statmod stringi stringr SummarizedExperiment survival sys threejs tibble tidyr tidyselect timechange timeDate tinytex tzdb utf8 vctrs viridis viridisLite vsn waiter withr xfun XML xml2 xtable XVector yaml

pRolocGUI - Interactive visualisation of spatial proteomics data

Rendered frompRolocGUI.Rmdusingknitr::rmarkdown

Last update: 2022-04-23
Started: 2014-07-02

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Readme and manuals

Help Manual

Help page	Topics
Interactive visualisation of spatial proteomics data	pRolocVis pRolocVis_aggregate pRolocVis_compare pRolocVis_explore