Package: pRolocGUI 2.17.0

Lisa Breckels

pRolocGUI: Interactive visualisation of spatial proteomics data

The package pRolocGUI comprises functions to interactively visualise spatial proteomics data on the basis of pRoloc, pRolocdata and shiny.

Authors:Lisa Breckels [aut, cre], Thomas Naake [aut], Laurent Gatto [aut]

pRolocGUI_2.17.0.tar.gz
pRolocGUI_2.17.0.zip(r-4.5)pRolocGUI_2.17.0.zip(r-4.4)pRolocGUI_2.17.0.zip(r-4.3)
pRolocGUI_2.17.0.tgz(r-4.4-any)pRolocGUI_2.17.0.tgz(r-4.3-any)
pRolocGUI_2.17.0.tar.gz(r-4.5-noble)pRolocGUI_2.17.0.tar.gz(r-4.4-noble)
pRolocGUI_2.17.0.tgz(r-4.4-emscripten)pRolocGUI_2.17.0.tgz(r-4.3-emscripten)
pRolocGUI.pdf |pRolocGUI.html✨
pRolocGUI/json (API)

# Install 'pRolocGUI' in R:

install.packages('pRolocGUI', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lgatto/prolocgui/issues

On BioConductor:pRolocGUI-2.17.0(bioc 3.21)pRolocGUI-2.16.0(bioc 3.20)

proteomics visualization gui

6.85 score 7 stars 3 scripts 239 downloads 5 mentions 1 exports 231 dependencies

Last updated 2 months agofrom:e4978d7b1b. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 30 2024
R-4.5-win	OK	Nov 30 2024
R-4.5-linux	OK	Nov 30 2024
R-4.4-win	OK	Nov 30 2024
R-4.4-mac	OK	Nov 30 2024
R-4.3-win	OK	Nov 30 2024
R-4.3-mac	OK	Nov 30 2024

Exports:pRolocVis

Dependencies:abind affy affyio annotate AnnotationDbi AnnotationFilter askpass assertthat base64enc BH Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocParallel biomaRt Biostrings bit bit64 blob bslib cachem caret class cli clock clue cluster coda codetools colorspace colourpicker commonmark cpp11 crayon crosstalk curl data.table DBI dbplyr DelayedArray dendextend DEoptimR diagram digest diptest doParallel dplyr DT e1071 evaluate fansi farver fastmap filelock flexmix FNN fontawesome foreach formatR fpc fresh fs futile.logger futile.options future future.apply gbm gdata genefilter generics GenomeInfoDb GenomeInfoDbData GenomicRanges ggplot2 ggvis globals glue gower gridExtra gtable gtools hardhat hexbin highr hms htmltools htmlwidgets httpuv httr httr2 hwriter igraph impute ipred IRanges isoband iterators jquerylib jsonlite KEGGREST kernlab KernSmooth knitr labeling lambda.r LaplacesDemon later lattice lava lazyeval lifecycle limma listenv lpSolve lubridate magrittr MALDIquant markdown MASS Matrix MatrixGenerics matrixStats mclust memoise mgcv mime miniUI mixtools mlbench MLInterfaces ModelMetrics modeltools MsCoreUtils MSnbase MultiAssayExperiment munsell mvtnorm mzID mzR ncdf4 nlme nnet numDeriv openssl parallelly pcaMethods pillar pkgconfig plogr plotly pls plyr png prabclus preprocessCore prettyunits pROC prodlim progress progressr pRoloc promises ProtGenerics proxy PSMatch purrr QFeatures R6 randomForest rappdirs RColorBrewer Rcpp RcppArmadillo recipes reshape2 Rhdf5lib rlang rmarkdown robustbase rpart RSQLite rstudioapi S4Arrays S4Vectors sampling sass scales segmented sfsmisc shape shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets snow sourcetools SparseArray SQUAREM statmod stringi stringr SummarizedExperiment survival sys threejs tibble tidyr tidyselect timechange timeDate tinytex tzdb UCSC.utils utf8 vctrs viridis viridisLite vsn waiter withr xfun XML xml2 xtable XVector yaml zlibbioc

pRolocGUI - Interactive visualisation of spatial proteomics data

Lisa Breckels, Thomas Naake, Laurent Gatto

Rendered frompRolocGUI.Rmdusingknitr::rmarkdownon Nov 30 2024.

Last update: 2022-04-23
Started: 2014-07-02

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Interactive visualisation of spatial proteomics data	pRolocVis pRolocVis_aggregate pRolocVis_compare pRolocVis_explore