Package: optimalFlow 1.25.0

Hristo Inouzhe

optimalFlow: optimalFlow

Optimal-transport techniques applied to supervised flow cytometry gating.

Authors:Hristo Inouzhe <[email protected]>

optimalFlow_1.25.0.tar.gz
optimalFlow_1.25.0.zip(r-4.7)optimalFlow_1.25.0.zip(r-4.6)optimalFlow_1.25.0.zip(r-4.5)
optimalFlow_1.25.0.tgz(r-4.6-any)optimalFlow_1.25.0.tgz(r-4.5-any)
optimalFlow_1.25.0.tar.gz(r-4.7-any)optimalFlow_1.25.0.tar.gz(r-4.6-any)
optimalFlow_1.25.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
optimalFlow/json (API)

# Install 'optimalFlow' in R:
install.packages('optimalFlow', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:optimalFlow-1.25.0(bioc 3.24)optimalFlow-1.24.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwareflowcytometrytechnology

3.30 score 10 scripts 325 downloads 1 mentions 20 exports 87 dependencies

Last updated from:2e8b2cd5ca. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR235
linux-devel-x86_64NOTE442
source / vignettesOK529
linux-release-x86_64NOTE383
macos-release-arm64NOTE191
macos-oldrel-arm64NOTE224
windows-develNOTE355
windows-releaseNOTE357
windows-oldrelNOTE360
wasm-releaseOK211

Exports:costWasserMatchingEllipsecytoPlotcytoPlot3dcytoPlotDatabasecytoPlotDatabase3destimationCellBarycenterestimCovCellGeneralf1Scoref1ScoreVotinglabelTransferlabelTransferEllipseoptimalFlowClassificationoptimalFlowTemplatesqdaClassificationtclust_HtclustWithInitializationtrimmedKBarycentervoteLabelTransferw2distwasserCostFunction

Dependencies:base64encBHBiobaseBiocGenericsbiocmakebslibcachemclicodetoolscpp11cytolibdata.tabledbscanDEoptimRdigestdir.expirydoParalleldplyrellipseevaluatefastmapfeaturefilelockflowCoreflowMeansFNNfontawesomeforeachfsgenericsgluehighrhtmltoolshtmlwidgetsiteratorsjquerylibjsonlitekernlabKernSmoothknitrkslatticelifecyclemagrittrMatrixmatrixStatsmclustmemoisemgcvmimemisc3dmulticoolmvtnormnlmeoptimalFlowDatapcaPPpillarpkgconfigplot3DpracmaR6randomForestrappdirsRcppRcppArmadilloRcppEigenRcppParallelRfastrglRhdf5librlangrmarkdownrobustbaseRProtoBufLibrrcovS4Vectorssasstibbletidyselecttinytextransportutf8vctrswithrxfunyamlzigg

optimalFlow: optimal-transport approach to Flow Cytometry analysis

Hristo Inouzhe

Rendered fromoptimalFlow_vignette.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2020-04-23
Started: 2019-09-17

Readme and manuals

Help Manual

Help pageTopics
costWasserMatchinEllipsecostWasserMatchingEllipse
cytoPlotcytoPlot
cytoPlot3dcytoPlot3d
cytoPlotDatabasecytoPlotDatabase
cytoPlotDatabase3dcytoPlotDatabase3d
estimationCellBarycenterestimationCellBarycenter
estimCovCellGeneralestimCovCellGeneral
f1Scoref1Score
f1ScoreVotingf1ScoreVoting
labelTransferlabelTransfer
labelTransferEllipselabelTransferEllipse
optimalFlowClassificationoptimalFlowClassification
optimalFlowTemplatesoptimalFlowTemplates
qdaClassificationqdaClassification
tclust_Htclust_H
tclustWithInitializationtclustWithInitialization
trimmedKBarycentertrimmedKBarycenter
voteLabelTransfervoteLabelTransfer
w2distw2dist
wasserCostFunctionwasserCostFunction