Introduction | Installation | optimalFlowTemplates | optimalFlowClassification | References
Package: optimalFlow 1.25.0
Hristo Inouzhe
optimalFlow: optimalFlow
Optimal-transport techniques applied to supervised flow cytometry gating.
Authors:
optimalFlow_1.25.0.tar.gz
optimalFlow_1.25.0.zip(r-4.7)optimalFlow_1.25.0.zip(r-4.6)optimalFlow_1.25.0.zip(r-4.5)
optimalFlow_1.25.0.tgz(r-4.6-any)optimalFlow_1.25.0.tgz(r-4.5-any)
optimalFlow_1.25.0.tar.gz(r-4.7-any)optimalFlow_1.25.0.tar.gz(r-4.6-any)
optimalFlow_1.25.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
optimalFlow/json (API)
| # Install 'optimalFlow' in R: |
| install.packages('optimalFlow', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:optimalFlow-1.25.0(bioc 3.24)optimalFlow-1.24.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwareflowcytometrytechnology
Last updated from:2e8b2cd5ca. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 239 | ||
| linux-devel-x86_64 | NOTE | 427 | ||
| source / vignettes | OK | 502 | ||
| linux-release-x86_64 | NOTE | 411 | ||
| macos-release-arm64 | NOTE | 181 | ||
| macos-oldrel-arm64 | NOTE | 259 | ||
| windows-devel | NOTE | 390 | ||
| windows-release | NOTE | 399 | ||
| windows-oldrel | NOTE | 386 | ||
| wasm-release | OK | 201 |
Exports:costWasserMatchingEllipsecytoPlotcytoPlot3dcytoPlotDatabasecytoPlotDatabase3destimationCellBarycenterestimCovCellGeneralf1Scoref1ScoreVotinglabelTransferlabelTransferEllipseoptimalFlowClassificationoptimalFlowTemplatesqdaClassificationtclust_HtclustWithInitializationtrimmedKBarycentervoteLabelTransferw2distwasserCostFunction
Dependencies:base64encBHBiobaseBiocGenericsbiocmakebslibcachemclicodetoolscpp11cytolibdata.tabledbscanDEoptimRdigestdir.expirydoParalleldplyrellipseevaluatefastmapfeaturefilelockflowCoreflowMeansFNNfontawesomeforeachfsgenericsgluehighrhtmltoolshtmlwidgetsiteratorsjquerylibjsonlitekernlabKernSmoothknitrkslatticelifecyclemagrittrMatrixmatrixStatsmclustmemoisemgcvmimemisc3dmulticoolmvtnormnlmeoptimalFlowDatapcaPPpillarpkgconfigplot3DpracmaR6randomForestrappdirsRcppRcppArmadilloRcppEigenRcppParallelRfastrglRhdf5librlangrmarkdownrobustbaseRProtoBufLibrrcovS4Vectorssasstibbletidyselecttinytextransportutf8vctrswithrxfunyamlzigg
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| costWasserMatchinEllipse | costWasserMatchingEllipse |
| cytoPlot | cytoPlot |
| cytoPlot3d | cytoPlot3d |
| cytoPlotDatabase | cytoPlotDatabase |
| cytoPlotDatabase3d | cytoPlotDatabase3d |
| estimationCellBarycenter | estimationCellBarycenter |
| estimCovCellGeneral | estimCovCellGeneral |
| f1Score | f1Score |
| f1ScoreVoting | f1ScoreVoting |
| labelTransfer | labelTransfer |
| labelTransferEllipse | labelTransferEllipse |
| optimalFlowClassification | optimalFlowClassification |
| optimalFlowTemplates | optimalFlowTemplates |
| qdaClassification | qdaClassification |
| tclust_H | tclust_H |
| tclustWithInitialization | tclustWithInitialization |
| trimmedKBarycenter | trimmedKBarycenter |
| voteLabelTransfer | voteLabelTransfer |
| w2dist | w2dist |
| wasserCostFunction | wasserCostFunction |
