Package: optimalFlow 1.19.0
optimalFlow: optimalFlow
Optimal-transport techniques applied to supervised flow cytometry gating.
Authors:
optimalFlow_1.19.0.tar.gz
optimalFlow_1.19.0.zip(r-4.5)optimalFlow_1.19.0.zip(r-4.4)optimalFlow_1.19.0.zip(r-4.3)
optimalFlow_1.19.0.tgz(r-4.4-any)optimalFlow_1.19.0.tgz(r-4.3-any)
optimalFlow_1.19.0.tar.gz(r-4.5-noble)optimalFlow_1.19.0.tar.gz(r-4.4-noble)
optimalFlow_1.19.0.tgz(r-4.4-emscripten)optimalFlow_1.19.0.tgz(r-4.3-emscripten)
optimalFlow.pdf |optimalFlow.html✨
optimalFlow/json (API)
# Install 'optimalFlow' in R: |
install.packages('optimalFlow', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:optimalFlow-1.19.0(bioc 3.21)optimalFlow-1.18.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwareflowcytometrytechnology
Last updated 2 months agofrom:3518f15031. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 18 2024 |
R-4.5-win | NOTE | Dec 18 2024 |
R-4.5-linux | NOTE | Dec 18 2024 |
R-4.4-win | NOTE | Dec 18 2024 |
R-4.4-mac | NOTE | Dec 18 2024 |
R-4.3-win | NOTE | Dec 18 2024 |
R-4.3-mac | NOTE | Nov 18 2024 |
Exports:costWasserMatchingEllipsecytoPlotcytoPlot3dcytoPlotDatabasecytoPlotDatabase3destimationCellBarycenterestimCovCellGeneralf1Scoref1ScoreVotinglabelTransferlabelTransferEllipseoptimalFlowClassificationoptimalFlowTemplatesqdaClassificationtclust_HtclustWithInitializationtrimmedKBarycentervoteLabelTransferw2distwasserCostFunction
Dependencies:base64encBHBiobaseBiocGenericsbslibcachemclicodetoolscpp11cytolibdata.tabledbscanDEoptimRdigestdoParalleldplyrellipseevaluatefansifastmapfeatureflowCoreflowMeansFNNfontawesomeforeachfsgenericsgluehighrhtmltoolshtmlwidgetsiteratorsjquerylibjsonlitekernlabKernSmoothknitrkslatticelifecyclemagrittrMatrixmatrixStatsmclustmemoisemgcvmimemisc3dmulticoolmvtnormnlmeoptimalFlowDatapcaPPpillarpkgconfigplot3DpracmaR6randomForestrappdirsRcppRcppArmadilloRcppEigenRcppGSLRcppParallelRcppZigguratRfastrglRhdf5librlangrmarkdownrobustbaseRProtoBufLibrrcovS4Vectorssasstibbletidyselecttinytextransportutf8vctrswithrxfunyaml
Readme and manuals
Help Manual
Help page | Topics |
---|---|
costWasserMatchinEllipse | costWasserMatchingEllipse |
cytoPlot | cytoPlot |
cytoPlot3d | cytoPlot3d |
cytoPlotDatabase | cytoPlotDatabase |
cytoPlotDatabase3d | cytoPlotDatabase3d |
estimationCellBarycenter | estimationCellBarycenter |
estimCovCellGeneral | estimCovCellGeneral |
f1Score | f1Score |
f1ScoreVoting | f1ScoreVoting |
labelTransfer | labelTransfer |
labelTransferEllipse | labelTransferEllipse |
optimalFlowClassification | optimalFlowClassification |
optimalFlowTemplates | optimalFlowTemplates |
qdaClassification | qdaClassification |
tclust_H | tclust_H |
tclustWithInitialization | tclustWithInitialization |
trimmedKBarycenter | trimmedKBarycenter |
voteLabelTransfer | voteLabelTransfer |
w2dist | w2dist |
wasserCostFunction | wasserCostFunction |