Package: optimalFlow 1.19.0

Hristo Inouzhe

optimalFlow: optimalFlow

Optimal-transport techniques applied to supervised flow cytometry gating.

Authors:Hristo Inouzhe <[email protected]>

optimalFlow_1.19.0.tar.gz
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optimalFlow_1.19.0.tgz(r-4.4-any)optimalFlow_1.19.0.tgz(r-4.3-any)
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optimalFlow.pdf |optimalFlow.html
optimalFlow/json (API)

# Install 'optimalFlow' in R:
install.packages('optimalFlow', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:optimalFlow-1.19.0(bioc 3.21)optimalFlow-1.18.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwareflowcytometrytechnology

3.30 score 1 scripts 162 downloads 1 mentions 20 exports 86 dependencies

Last updated 2 months agofrom:3518f15031. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 18 2024
R-4.5-winNOTEDec 18 2024
R-4.5-linuxNOTEDec 18 2024
R-4.4-winNOTEDec 18 2024
R-4.4-macNOTEDec 18 2024
R-4.3-winNOTEDec 18 2024
R-4.3-macNOTENov 18 2024

Exports:costWasserMatchingEllipsecytoPlotcytoPlot3dcytoPlotDatabasecytoPlotDatabase3destimationCellBarycenterestimCovCellGeneralf1Scoref1ScoreVotinglabelTransferlabelTransferEllipseoptimalFlowClassificationoptimalFlowTemplatesqdaClassificationtclust_HtclustWithInitializationtrimmedKBarycentervoteLabelTransferw2distwasserCostFunction

Dependencies:base64encBHBiobaseBiocGenericsbslibcachemclicodetoolscpp11cytolibdata.tabledbscanDEoptimRdigestdoParalleldplyrellipseevaluatefansifastmapfeatureflowCoreflowMeansFNNfontawesomeforeachfsgenericsgluehighrhtmltoolshtmlwidgetsiteratorsjquerylibjsonlitekernlabKernSmoothknitrkslatticelifecyclemagrittrMatrixmatrixStatsmclustmemoisemgcvmimemisc3dmulticoolmvtnormnlmeoptimalFlowDatapcaPPpillarpkgconfigplot3DpracmaR6randomForestrappdirsRcppRcppArmadilloRcppEigenRcppGSLRcppParallelRcppZigguratRfastrglRhdf5librlangrmarkdownrobustbaseRProtoBufLibrrcovS4Vectorssasstibbletidyselecttinytextransportutf8vctrswithrxfunyaml

optimalFlow: optimal-transport approach to Flow Cytometry analysis

Rendered fromoptimalFlow_vignette.Rmdusingknitr::rmarkdownon Dec 18 2024.

Last update: 2020-04-23
Started: 2019-09-17

Readme and manuals

Help Manual

Help pageTopics
costWasserMatchinEllipsecostWasserMatchingEllipse
cytoPlotcytoPlot
cytoPlot3dcytoPlot3d
cytoPlotDatabasecytoPlotDatabase
cytoPlotDatabase3dcytoPlotDatabase3d
estimationCellBarycenterestimationCellBarycenter
estimCovCellGeneralestimCovCellGeneral
f1Scoref1Score
f1ScoreVotingf1ScoreVoting
labelTransferlabelTransfer
labelTransferEllipselabelTransferEllipse
optimalFlowClassificationoptimalFlowClassification
optimalFlowTemplatesoptimalFlowTemplates
qdaClassificationqdaClassification
tclust_Htclust_H
tclustWithInitializationtclustWithInitialization
trimmedKBarycentertrimmedKBarycenter
voteLabelTransfervoteLabelTransfer
w2distw2dist
wasserCostFunctionwasserCostFunction