Package: oppti 1.21.0

Abdulkadir Elmas

oppti: Outlier Protein and Phosphosite Target Identifier

The aim of oppti is to analyze protein (and phosphosite) expressions to find outlying markers for each sample in the given cohort(s) for the discovery of personalized actionable targets.

Authors:Abdulkadir Elmas

oppti_1.21.0.tar.gz
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oppti.pdf |oppti.html✨
oppti/json (API)
NEWS

# Install 'oppti' in R:
install.packages('oppti', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/huang-lab/oppti/issues

On BioConductor:oppti-1.21.0(bioc 3.21)oppti-1.20.0(bioc 3.20)

proteomicsregressiondifferentialexpressionbiomedicalinformaticsgenetargetgeneexpressionnetwork

4.30 score 2 stars 2 scripts 226 downloads 10 exports 117 dependencies

Last updated 5 months agofrom:1c8e74d516. Checks:1 OK, 8 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 29 2025
R-4.5-winWARNINGMar 29 2025
R-4.5-macWARNINGMar 29 2025
R-4.5-linuxWARNINGMar 29 2025
R-4.4-winWARNINGMar 29 2025
R-4.4-macWARNINGMar 29 2025
R-4.4-linuxWARNINGMar 29 2025
R-4.3-winWARNINGMar 29 2025
R-4.3-macWARNINGMar 29 2025

Exports:artImputeclusterDatadropMarkersdysRegmarkOutopptioutScoresplotDenrankPerOutstatTest

Dependencies:askpassbase64encbrewbriobslibcachemcallrclicliprcolorspacecommonmarkcpp11crayoncredentialscurldescdevtoolsdiffobjdigestdownlitellipsisevaluatefansifarverfastmapfontawesomefsgertggplot2ghgitcredsgluegtablehighrhtmltoolshtmlwidgetshttpuvhttr2iniisobandjquerylibjsonliteknitrlabelinglaterlatticelifecyclelimmamagrittrMASSMatrixmemoisemgcvmimeminiUImunsellnlmeopensslparallelDistpheatmappillarpkgbuildpkgconfigpkgdownpkgloadplyrpraiseprettyunitsprocessxprofvispromisespspurrrR6raggrappdirsrcmdcheckRColorBrewerRcppRcppArmadilloRcppParallelremotesreshaperlangrmarkdownroxygen2rprojrootrstudioapirversionssassscalessessioninfoshinysourcetoolsstatmodstringistringrsyssystemfontstestthattextshapingtibbletinytexurlcheckerusethisutf8vctrsviridisLitewaldowhiskerwithrxfunxml2xopenxtableyamlzip

Outlier Protein and Phosphosite Target Identifier

Rendered fromanalysis.Rmdusingknitr::knitron Mar 29 2025.

Last update: 2021-08-27
Started: 2019-07-15