Package: openCyto 2.19.2
openCyto: Hierarchical Gating Pipeline for flow cytometry data
This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.
Authors:
openCyto_2.19.2.tar.gz
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openCyto.pdf |openCyto.html✨
openCyto/json (API)
NEWS
# Install 'openCyto' in R: |
install.packages('openCyto', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:openCyto-2.19.0(bioc 3.21)openCyto-2.18.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologyflowcytometrydataimportpreprocessingdatarepresentationcpp
Last updated 12 hours agofrom:1968c83083. Checks:1 OK, 11 WARNING. Indexed: yes.
Target | Result | Latest binary |
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Doc / Vignettes | OK | Mar 27 2025 |
R-4.5-win-x86_64 | WARNING | Mar 27 2025 |
R-4.5-mac-x86_64 | WARNING | Mar 27 2025 |
R-4.5-mac-aarch64 | WARNING | Mar 27 2025 |
R-4.5-linux-x86_64 | WARNING | Mar 27 2025 |
R-4.4-win-x86_64 | WARNING | Mar 27 2025 |
R-4.4-mac-x86_64 | WARNING | Mar 27 2025 |
R-4.4-mac-aarch64 | WARNING | Mar 27 2025 |
R-4.4-linux-x86_64 | WARNING | Mar 27 2025 |
R-4.3-win-x86_64 | WARNING | Mar 27 2025 |
R-4.3-mac-x86_64 | WARNING | Mar 27 2025 |
R-4.3-mac-aarch64 | WARNING | Mar 27 2025 |
Exports:add_popadd_pop_initCytoExploreR_.argDeparserCytoExploreR_.preprocess_csvCytoExploreR_.preprocess_rowdelete.helperGatesfast_rlmflowClust.1dflowClust.2dgate_flowclust_1dgate_flowClust_1dgate_flowclust_2dgate_flowClust_2dgate_mindensitygate_mindensity2gate_quad_sequentialgate_quad_tmixgate_quantilegatinggatingTemplategenerate_gate_templateget.helperGatesgetChildrengetGategetNodesgetParentgh_generate_templategs_add_gating_methodgs_add_gating_method_initgs_remove_gating_methodgt_delete_helpergatesgt_gatinggt_get_childrengt_get_gategt_get_helpergatesgt_get_nodesgt_get_parentgt_list_methodsgt_toggle_helpergateslistgtMethodsmindensitymindensity2plotprior_flowclustprior_flowClustquadGate.seqquadGate.tmixquantileGateregister_pluginsregisterPluginsremove_popshowtemplateGentoggle.helperGates
Dependencies:abindBHBiobaseBiocGenericsclicolorspacecpp11crayoncytolibdata.tableDelayedArraydeldirdplyrfansifarverflowClustflowCoreflowVizflowWorkspacegenericsggplot2gluegraphgtablehexbinIDPmiscinterpIRangesisobandjpegKernSmoothlabelinglatticelatticeExtralifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmunsellncdfFlownlmepillarpkgconfigpngR6RBGLRColorBrewerRcppRcppEigenRgraphvizRhdf5librlangRProtoBufLibS4ArraysS4VectorsscalesSparseArraytibbletidyselectutf8vctrsviridisLitewithrXMLXVector
An Introduction to the openCyto package
Rendered fromopenCytoVignette.Rmd
usingknitr
on Mar 27 2025.Last update: 2025-03-26
Started: 2014-02-05
OpenCyto: How to use different auto gating functions
Rendered fromHowToAutoGating.Rmd
usingknitr::rmarkdown
on Mar 27 2025.Last update: 2025-03-26
Started: 2016-06-02
How to write a csv gating template
Rendered fromHowToWriteCSVTemplate.Rmd
usingknitr::rmarkdown
on Mar 27 2025.Last update: 2025-03-26
Started: 2014-03-20