1 Introduction | 2 Quick Start
Package: omicade4 1.53.0
Chen Meng
omicade4: Multiple co-inertia analysis of omics datasets
This package performes multiple co-inertia analysis of omics datasets.
Authors:
omicade4_1.53.0.tar.gz
omicade4_1.53.0.zip(r-4.7)omicade4_1.53.0.zip(r-4.6)omicade4_1.53.0.zip(r-4.5)
omicade4_1.53.0.tgz(r-4.6-any)omicade4_1.53.0.tgz(r-4.5-any)
omicade4_1.53.0.tar.gz(r-4.7-any)omicade4_1.53.0.tar.gz(r-4.6-any)
omicade4_1.53.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
omicade4/json (API)
| # Install 'omicade4' in R: |
| install.packages('omicade4', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- NCI60_4arrays - Microarray gene expression profiles of the NCI 60 cell lines from 4 different platforms
On BioConductor:omicade4-1.53.0(bioc 3.24)omicade4-1.52.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwareclusteringclassificationmultiplecomparison
Last updated from:ac65c4e810. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 173 | ||
| linux-devel-x86_64 | NOTE | 277 | ||
| source / vignettes | OK | 234 | ||
| linux-release-x86_64 | NOTE | 249 | ||
| macos-release-arm64 | NOTE | 135 | ||
| macos-oldrel-arm64 | NOTE | 118 | ||
| windows-devel | NOTE | 179 | ||
| windows-release | NOTE | 178 | ||
| windows-oldrel | NOTE | 167 | ||
| wasm-release | OK | 139 |
Exports:mciaplot.mciaplotVarselectVartopVar
Dependencies:abindade4BiobaseBiocGenericsbitopscaToolsDelayedArraygenericsGenomicRangesgplotsgtoolsIRangesKernSmoothlatticemade4MASSMatrixMatrixGenericsmatrixStatspixmapRColorBrewerRcppRcppArmadilloS4ArraysS4Vectorsscatterplot3dSeqinfospSparseArraySummarizedExperimentXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| multiple co-inertia analysis of omics datasets | omicade4-package omicade4 |
| multiple co-inertia analysis | mcia plot.mcia |
| Microarray gene expression profiles of the NCI 60 cell lines from 4 different platforms | NCI60_4arrays |
| Plot variable (gene) spaces of result from MCIA or CIA | plotVar |
| Plot variable space of result from 'cia' | plotVar.cia |
| Plot variable space of result from 'mcia' | plotVar.mcia |
| Selecting variables (genes) from result of MCIA or CIA according to co-ordinates | selectVar |
| Selecting variables from result of CIA | selectVar.cia |
| Selecting variables from result of MCIA | selectVar.mcia |
| Selecting top weighted variables (genes) from result of MCIA or CIA | topVar |
| Selecting top weighted variables (genes) from result of CIA | topVar.cia |
| Selecting top weighted variables (genes) from result of MCIA | topVar.mcia |
