Package: odseq 1.33.0

José Jiménez

odseq: Outlier detection in multiple sequence alignments

Performs outlier detection of sequences in a multiple sequence alignment using bootstrap of predefined distance metrics. Outlier sequences can make downstream analyses unreliable or make the alignments less accurate while they are being constructed. This package implements the OD-seq algorithm proposed by Jehl et al (doi 10.1186/s12859-015-0702-1) for aligned sequences and a variant using string kernels for unaligned sequences.

Authors:José Jiménez

odseq_1.33.0.tar.gz
odseq_1.33.0.zip(r-4.5)odseq_1.33.0.zip(r-4.4)odseq_1.33.0.zip(r-4.3)
odseq_1.33.0.tgz(r-4.4-any)odseq_1.33.0.tgz(r-4.3-any)
odseq_1.33.0.tar.gz(r-4.5-noble)odseq_1.33.0.tar.gz(r-4.4-noble)
odseq_1.33.0.tgz(r-4.4-emscripten)odseq_1.33.0.tgz(r-4.3-emscripten)
odseq.pdf |odseq.html✨
odseq/json (API)

Peer review:

On BioConductor:odseq-1.33.0(bioc 3.20)odseq-1.32.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

3 exports 1.00 score 31 dependencies 1 dependents

Last updated 2 months agofrom:4ec507f604

Exports:odmixodseqodseq_unaligned

Dependencies:apclusteraskpassBiocGenericsBiostringsclasscrayoncurle1071GenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitekebabskernlablatticeLiblineaRMASSMatrixmclustmimemsaopensslproxyR6RcppS4VectorssysUCSC.utilsXVectorzlibbioc