Package: odseq 1.35.0
José Jiménez
odseq: Outlier detection in multiple sequence alignments
Performs outlier detection of sequences in a multiple sequence alignment using bootstrap of predefined distance metrics. Outlier sequences can make downstream analyses unreliable or make the alignments less accurate while they are being constructed. This package implements the OD-seq algorithm proposed by Jehl et al (doi 10.1186/s12859-015-0702-1) for aligned sequences and a variant using string kernels for unaligned sequences.
Authors:
odseq_1.35.0.tar.gz
odseq_1.35.0.zip(r-4.5)odseq_1.35.0.zip(r-4.4)odseq_1.35.0.zip(r-4.3)
odseq_1.35.0.tgz(r-4.4-any)odseq_1.35.0.tgz(r-4.3-any)
odseq_1.35.0.tar.gz(r-4.5-noble)odseq_1.35.0.tar.gz(r-4.4-noble)
odseq_1.35.0.tgz(r-4.4-emscripten)odseq_1.35.0.tgz(r-4.3-emscripten)
odseq.pdf |odseq.html✨
odseq/json (API)
| # Install 'odseq' in R: |
| install.packages('odseq', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- seqs - PFAM plus random data.
On BioConductor:odseq-1.35.0(bioc 3.21)odseq-1.34.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
alignmentmultiplesequencealignment
Last updated 2 months agofrom:c7de581ae4. Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 29 2024 |
| R-4.5-win | NOTE | Nov 29 2024 |
| R-4.5-linux | NOTE | Nov 29 2024 |
| R-4.4-win | NOTE | Nov 29 2024 |
| R-4.4-mac | NOTE | Nov 29 2024 |
| R-4.3-win | OK | Nov 29 2024 |
| R-4.3-mac | OK | Nov 29 2024 |
Exports:odmixodseqodseq_unaligned
Dependencies:apclusteraskpassBiocGenericsBiostringsclasscrayoncurle1071genericsGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitekebabskernlablatticeLiblineaRMASSMatrixmclustmimemsaopensslproxyR6RcppS4VectorssysUCSC.utilsXVectorzlibbioc
