Package: nuCpos 1.25.0
Hiroaki Kato
nuCpos: An R package for prediction of nucleosome positions
nuCpos, a derivative of NuPoP, is an R package for prediction of nucleosome positions. nuCpos calculates local and whole nucleosomal histone binding affinity (HBA) scores for a given 147-bp sequence. Note: This package was designed to demonstrate the use of chemical maps in prediction. As the parental package NuPoP now provides chemical-map-based prediction, the function for dHMM-based prediction was removed from this package. nuCpos continues to provide functions for HBA calculation.
Authors:
nuCpos_1.25.0.tar.gz
nuCpos_1.25.0.zip(r-4.5)nuCpos_1.25.0.zip(r-4.4)nuCpos_1.25.0.zip(r-4.3)
nuCpos_1.25.0.tgz(r-4.4-any)nuCpos_1.25.0.tgz(r-4.3-any)
nuCpos_1.25.0.tar.gz(r-4.5-noble)nuCpos_1.25.0.tar.gz(r-4.4-noble)
nuCpos_1.25.0.tgz(r-4.4-emscripten)nuCpos_1.25.0.tgz(r-4.3-emscripten)
nuCpos.pdf |nuCpos.html✨
nuCpos/json (API)
NEWS
| # Install 'nuCpos' in R: |
| install.packages('nuCpos', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:nuCpos-1.25.0(bioc 3.21)nuCpos-1.24.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
geneticsepigeneticsnucleosomepositioning
Last updated 3 months agofrom:8f49c5e6df. Checks:1 OK, 3 NOTE, 3 ERROR. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Dec 29 2024 |
| R-4.5-win | ERROR | Dec 29 2024 |
| R-4.5-linux | NOTE | Dec 29 2024 |
| R-4.4-win | ERROR | Dec 29 2024 |
| R-4.4-mac | NOTE | Dec 29 2024 |
| R-4.3-win | ERROR | Dec 29 2024 |
| R-4.3-mac | NOTE | Dec 29 2024 |
Dependencies:
