Package: nuCpos 1.23.0

Hiroaki Kato

nuCpos: An R package for prediction of nucleosome positions

nuCpos, a derivative of NuPoP, is an R package for prediction of nucleosome positions. nuCpos calculates local and whole nucleosomal histone binding affinity (HBA) scores for a given 147-bp sequence. Note: This package was designed to demonstrate the use of chemical maps in prediction. As the parental package NuPoP now provides chemical-map-based prediction, the function for dHMM-based prediction was removed from this package. nuCpos continues to provide functions for HBA calculation.

Authors:Hiroaki Kato, Takeshi Urano

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nuCpos.pdf |nuCpos.html✨
nuCpos/json (API)
NEWS

# Install 'nuCpos' in R:
install.packages('nuCpos', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:nuCpos-1.23.0(bioc 3.20)nuCpos-1.22.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

2 exports 0.91 score 0 dependencies 1 mentions

Last updated 2 months agofrom:1b7524dcee

Exports:HBAlocalHBA

Dependencies:

An R package for prediction of nucleosome positioning

Rendered fromnuCpos-intro.Rnwusingutils::Sweaveon Jul 04 2024.

Last update: 2023-02-15
Started: 2018-07-31