Package: ncGTW 1.19.0
ncGTW: Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection
The purpose of ncGTW is to help XCMS for LC-MS data alignment. Currently, ncGTW can detect the misaligned feature groups by XCMS, and the user can choose to realign these feature groups by ncGTW or not.
Authors:
ncGTW_1.19.0.tar.gz
ncGTW_1.19.0.zip(r-4.5)ncGTW_1.19.0.zip(r-4.4)ncGTW_1.19.0.zip(r-4.3)
ncGTW_1.19.0.tgz(r-4.4-arm64)ncGTW_1.19.0.tgz(r-4.4-x86_64)ncGTW_1.19.0.tgz(r-4.3-arm64)ncGTW_1.19.0.tgz(r-4.3-x86_64)
ncGTW_1.19.0.tar.gz(r-4.5-noble)ncGTW_1.19.0.tar.gz(r-4.4-noble)
ncGTW_1.19.0.tgz(r-4.4-emscripten)ncGTW_1.19.0.tgz(r-4.3-emscripten)
ncGTW.pdf |ncGTW.html✨
ncGTW/json (API)
NEWS
# Install 'ncGTW' in R: |
install.packages('ncGTW', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/chiungtingwu/ncgtw/issues
- xcmsExamples - Examples of xcmsSet for inputs of ncGTW
On BioConductor:ncGTW-1.19.0(bioc 3.20)ncGTW-1.18.0(bioc 3.19)
Last updated 2 months agofrom:526b2e6a6e
Exports:adjustRTalignDatacompCVdownSamplegroupInfoloadProfilemeanCorOlmisalignDetectncGTWalignncGTWpathncGTWpeaksplotGroupprofilesrtncGTWrtRawscanRange
Dependencies:abindaffyaffyioAnnotationFilteraskpassbase64encBHBiobaseBiocBaseUtilsBiocGenericsBiocManagerBiocParallelbslibcachemcliclueclustercodetoolscolorspacecpp11crayoncrosstalkcurldata.tableDBIDelayedArraydigestdoParalleldplyrevaluatefansifarverfastmapfontawesomeforeachformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehighrhmshtmltoolshtmlwidgetshttrigraphimputeIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmamagrittrMALDIquantMASSMassSpecWaveletMatrixMatrixGenericsmatrixStatsmemoiseMetaboCoreUtilsmgcvmimeMsCoreUtilsMsExperimentMsFeaturesMSnbaseMultiAssayExperimentmunsellmzIDmzRncdf4nlmeopensslpcaMethodspillarpkgconfigplotlyplyrpreprocessCoreprettyunitsprogresspromisesProtGenericsPSMatchpurrrQFeaturesR6rappdirsRColorBrewerRcppreshape2Rhdf5librlangrmarkdownS4ArraysS4VectorssassscalessnowSparseArraySpectrastatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisLitevsnwithrxcmsxfunXMLXVectoryamlzlibbioc